Job ID = 12237417
SRX = SRX2851564
Genome = rm6
Started at	210330_16:51:17

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 171028082 spots for SRR5597241/SRR5597241.sra
Written 171028082 spots for SRR5597241/SRR5597241.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 14939190464 Mar 30 17:03 SRR5597241.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2851564.sum.gz
 output alignment file  :SRX2851564.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51741 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106413 ms)
 -suffix array for c2t genome.... finished (elapsed: 116732 ms)
 -suffix array for g2a genome.... finished (elapsed: 126783 ms)
 -reference sequence.... finished (elapsed: 127207 ms)
Index loading finished.
File(s) loaded: SRR5597241.fastq.gz.
Time elapsed:8194518 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2851564’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 11822601152 Mar 30 19:32 SRX2851564.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  2129107173 Mar 30 19:32 SRX2851564.sum.gz
SRX2851564.sum.gz was set to analysis list.
Analyzing SRX2851564.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5028 Mar 30 19:51 SRX2851564.mapsum.html
Processing "SRX2851564.bisulalign.gz" (11822601152 bytes)
*****************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 20:01 SRX2851564.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561738 Mar 30 20:09 SRX2851564.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2851564.graph
Output File (methyl)    :SRX2851564.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2851564.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2851564.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227538813 Mar 30 20:23 SRX2851564.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   162119511 Mar 30 20:23 SRX2851564.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   263583253 Mar 30 20:23 SRX2851564.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1171622 Mar 30 21:32 SRX2851564.hmr
-rw-r--r-- 1 okishinya so-ddmku      60773 Mar 30 21:32 SRX2851564.pmd
-rw-r--r-- 1 okishinya so-ddmku    6362370 Mar 30 21:32 SRX2851564.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 239965990 Mar 30 21:38 SRX2851564.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 223856051 Mar 30 21:35 SRX2851564.cpg.methyl.bw

=-=-=num_reads	171028078
=-=-=mapping_rate_1	0.878
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.778
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	48907
=-=-=partial_methyl_region	2539
=-=-=high_methyl_region	263630
=-=-=coverage	2.56706
=-=-=end	210330_21:39:17
=-=-=duration	4.800