Job ID = 12237415
SRX = SRX2851563
Genome = rm6
Started at	210330_16:49:55

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 164147477 spots for SRR5597240/SRR5597240.sra
Written 164147477 spots for SRR5597240/SRR5597240.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 14407626973 Mar 30 17:01 SRR5597240.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2851563.sum.gz
 output alignment file  :SRX2851563.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51808 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106532 ms)
 -suffix array for c2t genome.... finished (elapsed: 132436 ms)
 -suffix array for g2a genome.... finished (elapsed: 174499 ms)
 -reference sequence.... finished (elapsed: 178784 ms)
Index loading finished.
File(s) loaded: SRR5597240.fastq.gz.
Time elapsed:7252246 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2851563’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 11516697407 Mar 30 19:14 SRX2851563.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1999525730 Mar 30 19:14 SRX2851563.sum.gz
SRX2851563.sum.gz was set to analysis list.
Analyzing SRX2851563.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5189 Mar 30 19:33 SRX2851563.mapsum.html
Processing "SRX2851563.bisulalign.gz" (11516697407 bytes)
************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 19:43 SRX2851563.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561756 Mar 30 19:50 SRX2851563.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2851563.graph
Output File (methyl)    :SRX2851563.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2851563.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2851563.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   228500269 Mar 30 20:04 SRX2851563.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   149337883 Mar 30 20:04 SRX2851563.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   262234622 Mar 30 20:04 SRX2851563.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1081962 Mar 30 21:07 SRX2851563.hmr
-rw-r--r-- 1 okishinya so-ddmku      57245 Mar 30 21:07 SRX2851563.pmd
-rw-r--r-- 1 okishinya so-ddmku    6056841 Mar 30 21:07 SRX2851563.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 227166709 Mar 30 21:13 SRX2851563.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 210628584 Mar 30 21:10 SRX2851563.cpg.methyl.bw

=-=-=num_reads	164147474
=-=-=mapping_rate_1	0.877
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.801
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	45172
=-=-=partial_methyl_region	2391
=-=-=high_methyl_region	250849
=-=-=coverage	2.50609
=-=-=end	210330_21:14:00
=-=-=duration	4.401