Job ID = 12237413
SRX = SRX2851562
Genome = rm6
Started at	210330_16:49:40

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 150284624 spots for SRR5597239/SRR5597239.sra
Written 150284624 spots for SRR5597239/SRR5597239.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 12990124402 Mar 30 17:00 SRR5597239.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2851562.sum.gz
 output alignment file  :SRX2851562.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 52553 ms)
 -FM-Index for g2a genome.... finished (elapsed: 107308 ms)
 -suffix array for c2t genome.... finished (elapsed: 118167 ms)
 -suffix array for g2a genome.... finished (elapsed: 130092 ms)
 -reference sequence.... finished (elapsed: 130495 ms)
Index loading finished.
File(s) loaded: SRR5597239.fastq.gz.
Time elapsed:7040078 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2851562’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10277806549 Mar 30 19:08 SRX2851562.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1911490791 Mar 30 19:08 SRX2851562.sum.gz
SRX2851562.sum.gz was set to analysis list.
Analyzing SRX2851562.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5340 Mar 30 19:25 SRX2851562.mapsum.html
Processing "SRX2851562.bisulalign.gz" (10277806549 bytes)
*: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 19:34 SRX2851562.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559720 Mar 30 19:41 SRX2851562.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2851562.graph
Output File (methyl)    :SRX2851562.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2851562.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2851562.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227501139 Mar 30 19:55 SRX2851562.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   146818340 Mar 30 19:55 SRX2851562.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   260305929 Mar 30 19:55 SRX2851562.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1081722 Mar 30 20:46 SRX2851562.hmr
-rw-r--r-- 1 okishinya so-ddmku      54443 Mar 30 20:46 SRX2851562.pmd
-rw-r--r-- 1 okishinya so-ddmku    5731759 Mar 30 20:46 SRX2851562.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 223732425 Mar 30 20:51 SRX2851562.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 206946822 Mar 30 20:48 SRX2851562.cpg.methyl.bw

=-=-=num_reads	150284623
=-=-=mapping_rate_1	0.897
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.806
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	45160
=-=-=partial_methyl_region	2281
=-=-=high_methyl_region	237470
=-=-=coverage	2.26561
=-=-=end	210330_20:52:17
=-=-=duration	4.043