Job ID = 12237412
SRX = SRX2851561
Genome = rm6
Started at	210330_16:48:18

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 149805924 spots for SRR5597238/SRR5597238.sra
Written 149805924 spots for SRR5597238/SRR5597238.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 12799437584 Mar 30 16:58 SRR5597238.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2851561.sum.gz
 output alignment file  :SRX2851561.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54939 ms)
 -FM-Index for g2a genome.... finished (elapsed: 113059 ms)
 -suffix array for c2t genome.... finished (elapsed: 145760 ms)
 -suffix array for g2a genome.... finished (elapsed: 178408 ms)
 -reference sequence.... finished (elapsed: 181274 ms)
Index loading finished.
File(s) loaded: SRR5597238.fastq.gz.
Time elapsed:8680046 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2851561’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10186034764 Mar 30 19:34 SRX2851561.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  1842839008 Mar 30 19:34 SRX2851561.sum.gz
SRX2851561.sum.gz was set to analysis list.
Analyzing SRX2851561.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5416 Mar 30 19:51 SRX2851561.mapsum.html
Processing "SRX2851561.bisulalign.gz" (10186034764 bytes)
*********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 20:01 SRX2851561.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559749 Mar 30 20:09 SRX2851561.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2851561.graph
Output File (methyl)    :SRX2851561.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2851561.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2851561.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   226841429 Mar 30 20:23 SRX2851561.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   157464634 Mar 30 20:23 SRX2851561.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   260140777 Mar 30 20:23 SRX2851561.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1153319 Mar 30 21:31 SRX2851561.hmr
-rw-r--r-- 1 okishinya so-ddmku      60098 Mar 30 21:31 SRX2851561.pmd
-rw-r--r-- 1 okishinya so-ddmku    6451784 Mar 30 21:31 SRX2851561.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 234535823 Mar 30 21:37 SRX2851561.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 214993740 Mar 30 21:34 SRX2851561.cpg.methyl.bw

=-=-=num_reads	149805923
=-=-=mapping_rate_1	0.866
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.76
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	48143
=-=-=partial_methyl_region	2513
=-=-=high_methyl_region	267325
=-=-=coverage	2.29823
=-=-=end	210330_21:38:09
=-=-=duration	4.830