Job ID = 12237422
SRX = SRX2851560
Genome = rm6
Started at	210330_16:58:54

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 233613929 spots for SRR5597237/SRR5597237.sra
Written 233613929 spots for SRR5597237/SRR5597237.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 21175120456 Mar 30 17:12 SRR5597237.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2851560.sum.gz
 output alignment file  :SRX2851560.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 28597 ms)
 -FM-Index for g2a genome.... finished (elapsed: 56710 ms)
 -suffix array for c2t genome.... finished (elapsed: 64241 ms)
 -suffix array for g2a genome.... finished (elapsed: 71488 ms)
 -reference sequence.... finished (elapsed: 71737 ms)
Index loading finished.
File(s) loaded: SRR5597237.fastq.gz.
Time elapsed:16071332 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2851560’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 14128317591 Mar 30 21:52 SRX2851560.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  2872344351 Mar 30 21:52 SRX2851560.sum.gz
SRX2851560.sum.gz was set to analysis list.
Analyzing SRX2851560.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5036 Mar 30 22:10 SRX2851560.mapsum.html
Processing "SRX2851560.bisulalign.gz" (14128317591 bytes)
**: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 22:23 SRX2851560.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      561755 Mar 30 22:30 SRX2851560.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2851560.graph
Output File (methyl)    :SRX2851560.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2851560.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2851560.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   227659680 Mar 30 22:42 SRX2851560.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   169591920 Mar 30 22:42 SRX2851560.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   265868150 Mar 30 22:42 SRX2851560.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1225843 Mar 30 23:38 SRX2851560.hmr
-rw-r--r-- 1 okishinya so-ddmku      61196 Mar 30 23:38 SRX2851560.pmd
-rw-r--r-- 1 okishinya so-ddmku    6459346 Mar 30 23:38 SRX2851560.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 247550568 Mar 30 23:44 SRX2851560.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 231952407 Mar 30 23:41 SRX2851560.cpg.methyl.bw

=-=-=num_reads	233613929
=-=-=mapping_rate_1	0.842
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.764
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	51177
=-=-=partial_methyl_region	2554
=-=-=high_methyl_region	267694
=-=-=coverage	2.84599
=-=-=end	210330_23:44:41
=-=-=duration	6.763