Job ID = 12237414
SRX = SRX2851559
Genome = rm6
Started at	210330_16:49:55

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 163480675 spots for SRR5597236/SRR5597236.sra
Written 163480675 spots for SRR5597236/SRR5597236.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 13945323165 Mar 30 17:01 SRR5597236.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2851559.sum.gz
 output alignment file  :SRX2851559.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54156 ms)
 -FM-Index for g2a genome.... finished (elapsed: 111522 ms)
 -suffix array for c2t genome.... finished (elapsed: 149436 ms)
 -suffix array for g2a genome.... finished (elapsed: 191452 ms)
 -reference sequence.... finished (elapsed: 195784 ms)
Index loading finished.
File(s) loaded: SRR5597236.fastq.gz.
Time elapsed:7259284 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2851559’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 10262496448 Mar 30 19:14 SRX2851559.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  2038872396 Mar 30 19:14 SRX2851559.sum.gz
SRX2851559.sum.gz was set to analysis list.
Analyzing SRX2851559.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        4943 Mar 30 19:31 SRX2851559.mapsum.html
Processing "SRX2851559.bisulalign.gz" (10262496448 bytes)
*********************************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 19:40 SRX2851559.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559704 Mar 30 19:48 SRX2851559.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2851559.graph
Output File (methyl)    :SRX2851559.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2851559.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2851559.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   226380275 Mar 30 20:02 SRX2851559.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   155784788 Mar 30 20:02 SRX2851559.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   259050916 Mar 30 20:02 SRX2851559.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1193068 Mar 30 21:09 SRX2851559.hmr
-rw-r--r-- 1 okishinya so-ddmku      57483 Mar 30 21:09 SRX2851559.pmd
-rw-r--r-- 1 okishinya so-ddmku    6470584 Mar 30 21:09 SRX2851559.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 232830610 Mar 30 21:15 SRX2851559.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 213313275 Mar 30 21:12 SRX2851559.cpg.methyl.bw

=-=-=num_reads	163480675
=-=-=mapping_rate_1	0.861
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.774
=-=-=methyl_rate_cpg_lambda	-
=-=-=low_methyl_region	49816
=-=-=partial_methyl_region	2403
=-=-=high_methyl_region	268210
=-=-=coverage	2.18928
=-=-=end	210330_21:16:18
=-=-=duration	4.439