Job ID = 12237435
SRX = SRX2755523
Genome = rm6
Started at	210330_17:16:47

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 218244315 spots for SRR5470960/SRR5470960.sra
Written 218244315 spots for SRR5470960/SRR5470960.sra
Read 164473129 spots for SRR5470961/SRR5470961.sra
Written 164473129 spots for SRR5470961/SRR5470961.sra
Read 163326083 spots for SRR5470962/SRR5470962.sra
Written 163326083 spots for SRR5470962/SRR5470962.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 14577769883 Mar 30 17:56 SRR5470962.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 14748184827 Mar 30 17:45 SRR5470961.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 30884499967 Mar 30 17:35 SRR5470960.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2755523.sum.gz
 output alignment file  :SRX2755523.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32334 ms)
 -FM-Index for g2a genome.... finished (elapsed: 65358 ms)
 -suffix array for c2t genome.... finished (elapsed: 93297 ms)
 -suffix array for g2a genome.... finished (elapsed: 126747 ms)
 -reference sequence.... finished (elapsed: 130918 ms)
Index loading finished.
File(s) loaded: SRR5470960.fastq.gz.
File(s) loaded: SRR5470961.fastq.gz.
File(s) loaded: SRR5470962.fastq.gz.
Time elapsed:30272371 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2755523’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 27746352567 Mar 31 03:02 SRX2755523.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  5465443426 Mar 31 03:02 SRX2755523.sum.gz
SRX2755523.sum.gz was set to analysis list.
Analyzing SRX2755523.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5902 Mar 31 03:39 SRX2755523.mapsum.html
Processing "SRX2755523.bisulalign.gz" (27746352567 bytes)
*******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 04:00 SRX2755523.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      566597 Mar 31 04:07 SRX2755523.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2755523.graph
Output File (methyl)    :SRX2755523.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2755523.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2755523.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   237616298 Mar 31 04:19 SRX2755523.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   149891583 Mar 31 04:19 SRX2755523.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   263585513 Mar 31 04:19 SRX2755523.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1379474 Mar 31 05:01 SRX2755523.hmr
-rw-r--r-- 1 okishinya so-ddmku     40444 Mar 31 05:01 SRX2755523.pmd
-rw-r--r-- 1 okishinya so-ddmku  10586068 Mar 31 05:01 SRX2755523.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 224465583 Mar 31 05:05 SRX2755523.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 193763023 Mar 31 05:03 SRX2755523.cpg.methyl.bw

=-=-=num_reads	546043526
=-=-=mapping_rate_1	0.662
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.698
=-=-=methyl_rate_cpg_lambda	0.275
=-=-=low_methyl_region	57580
=-=-=partial_methyl_region	1689
=-=-=high_methyl_region	439384
=-=-=coverage	6.49203
=-=-=end	210331_05:06:03
=-=-=duration	11.821