Job ID = 12237441
SRX = SRX2755522
Genome = rm6
Started at	210330_17:29:21

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 214844734 spots for SRR5470953/SRR5470953.sra
Written 214844734 spots for SRR5470953/SRR5470953.sra
Read 168657055 spots for SRR5470954/SRR5470954.sra
Written 168657055 spots for SRR5470954/SRR5470954.sra
2021-03-30T09:13:14 fastq-dump.2.10.7 err: data corrupt while executing function within transform module - failed SRR5470955/SRR5470955.sra

=============================================================
An error occurred during processing.
A report was generated into the file '/home/okishinya/ncbi_error_report.txt'.
If the problem persists, you may consider sending the file
to 'sra-tools@ncbi.nlm.nih.gov' for assistance.
=============================================================

fastq-dump quit with error code 3
Read 169204578 spots for SRR5470956/SRR5470956.sra
Written 169204578 spots for SRR5470956/SRR5470956.sra
Read 163755422 spots for SRR5470957/SRR5470957.sra
Written 163755422 spots for SRR5470957/SRR5470957.sra
Read 185344782 spots for SRR5470958/SRR5470958.sra
Written 185344782 spots for SRR5470958/SRR5470958.sra
Read 183790977 spots for SRR5470959/SRR5470959.sra
Written 183790977 spots for SRR5470959/SRR5470959.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 17321596068 Mar 30 19:11 SRR5470959.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku  9905813073 Mar 30 18:55 SRR5470958.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 14652585814 Mar 30 18:41 SRR5470957.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15205856046 Mar 30 18:28 SRR5470956.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku  4588205070 Mar 30 18:13 SRR5470955.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15294252845 Mar 30 18:09 SRR5470954.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 30355074389 Mar 30 17:55 SRR5470953.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2755522.sum.gz
 output alignment file  :SRX2755522.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 38455 ms)
 -FM-Index for g2a genome.... finished (elapsed: 76587 ms)
 -suffix array for c2t genome.... finished (elapsed: 107400 ms)
 -suffix array for g2a genome.... finished (elapsed: 138513 ms)
 -reference sequence.... finished (elapsed: 141679 ms)
Index loading finished.
File(s) loaded: SRR5470953.fastq.gz.
File(s) loaded: SRR5470954.fastq.gz.
File(s) loaded: SRR5470955.fastq.gz.
File(s) loaded: SRR5470956.fastq.gz.
File(s) loaded: SRR5470957.fastq.gz.
File(s) loaded: SRR5470958.fastq.gz.
File(s) loaded: SRR5470959.fastq.gz.
Time elapsed:82692581 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 59522109141 Mar 31 19:39 SRX2755522.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 11853854400 Mar 31 19:39 SRX2755522.sum.gz
SRX2755522.sum.gz was set to analysis list.
Analyzing SRX2755522.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5752 Mar 31 21:31 SRX2755522.mapsum.html
Processing "SRX2755522.bisulalign.gz" (59522109141 bytes)
***************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 22:39 SRX2755522.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      578741 Mar 31 22:49 SRX2755522.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2755522.graph
Output File (methyl)    :SRX2755522.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2755522.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2755522.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   242151076 Mar 31 23:05 SRX2755522.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   124140583 Mar 31 23:05 SRX2755522.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   254417543 Mar 31 23:05 SRX2755522.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   2024483 Mar 31 23:58 SRX2755522.hmr
-rw-r--r-- 1 okishinya so-ddmku     21609 Mar 31 23:58 SRX2755522.pmd
-rw-r--r-- 1 okishinya so-ddmku  11106849 Mar 31 23:58 SRX2755522.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 199893085 Apr  1 00:03 SRX2755522.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 157545168 Apr  1 00:01 SRX2755522.cpg.methyl.bw

=-=-=num_reads	1136437100
=-=-=mapping_rate_1	0.718
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.692
=-=-=methyl_rate_cpg_lambda	0.747
=-=-=low_methyl_region	84513
=-=-=partial_methyl_region	901
=-=-=high_methyl_region	461235
=-=-=coverage	13.35
=-=-=end	210401_00:04:17
=-=-=duration	30.582