Job ID = 12237440
SRX = SRX2755521
Genome = rm6
Started at	210330_17:28:36

sra ファイルのダウンロード中...

Read layout: SINGLE


fastq に変換中...

Read 220405988 spots for SRR5470948/SRR5470948.sra
Written 220405988 spots for SRR5470948/SRR5470948.sra
Read 171861668 spots for SRR5470949/SRR5470949.sra
Written 171861668 spots for SRR5470949/SRR5470949.sra
Read 176182749 spots for SRR5470950/SRR5470950.sra
Written 176182749 spots for SRR5470950/SRR5470950.sra
2021-03-30T09:28:50 fastq-dump.2.10.7 err: data corrupt while executing function within transform module - failed SRR5470951/SRR5470951.sra

=============================================================
An error occurred during processing.
A report was generated into the file '/home/okishinya/ncbi_error_report.txt'.
If the problem persists, you may consider sending the file
to 'sra-tools@ncbi.nlm.nih.gov' for assistance.
=============================================================

fastq-dump quit with error code 3
Read 171572772 spots for SRR5470952/SRR5470952.sra
Written 171572772 spots for SRR5470952/SRR5470952.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 15419351377 Mar 30 18:43 SRR5470952.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku  5627844689 Mar 30 18:28 SRR5470951.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15884561241 Mar 30 18:23 SRR5470950.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15497679234 Mar 30 18:07 SRR5470949.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 35280638937 Mar 30 17:52 SRR5470948.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2755521.sum.gz
 output alignment file  :SRX2755521.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 37783 ms)
 -FM-Index for g2a genome.... finished (elapsed: 75894 ms)
 -suffix array for c2t genome.... finished (elapsed: 104873 ms)
 -suffix array for g2a genome.... finished (elapsed: 134640 ms)
 -reference sequence.... finished (elapsed: 138277 ms)
Index loading finished.
File(s) loaded: SRR5470948.fastq.gz.
File(s) loaded: SRR5470949.fastq.gz.
File(s) loaded: SRR5470950.fastq.gz.
File(s) loaded: SRR5470951.fastq.gz.
File(s) loaded: SRR5470952.fastq.gz.
Time elapsed:76402064 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2755521’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 43057213613 Mar 31 17:12 SRX2755521.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  8240396157 Mar 31 17:12 SRX2755521.sum.gz
SRX2755521.sum.gz was set to analysis list.
Analyzing SRX2755521.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5398 Mar 31 18:33 SRX2755521.mapsum.html
Processing "SRX2755521.bisulalign.gz" (43057213613 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 19:29 SRX2755521.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      572651 Mar 31 19:39 SRX2755521.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2755521.graph
Output File (methyl)    :SRX2755521.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2755521.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2755521.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   242439399 Mar 31 19:55 SRX2755521.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   155201595 Mar 31 19:55 SRX2755521.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   265911126 Mar 31 19:55 SRX2755521.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   1509796 Mar 31 20:51 SRX2755521.hmr
-rw-r--r-- 1 okishinya so-ddmku     31025 Mar 31 20:51 SRX2755521.pmd
-rw-r--r-- 1 okishinya so-ddmku  10527778 Mar 31 20:51 SRX2755521.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 229252611 Mar 31 20:58 SRX2755521.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 194808110 Mar 31 20:54 SRX2755521.cpg.methyl.bw

=-=-=num_reads	802331485
=-=-=mapping_rate_1	0.691
=-=-=mapping_rate_2	N/A
=-=-=methyl_rate_cpg_total	0.689
=-=-=methyl_rate_cpg_lambda	0.701
=-=-=low_methyl_region	63021
=-=-=partial_methyl_region	1295
=-=-=high_methyl_region	436940
=-=-=coverage	9.9282
=-=-=end	210331_20:58:52
=-=-=duration	27.504