Job ID = 12237438
SRX = SRX2755520
Genome = rm6
Started at	210330_17:26:51

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 219088060 spots for SRR5470945/SRR5470945.sra
Written 219088060 spots for SRR5470945/SRR5470945.sra
Read 221775993 spots for SRR5470946/SRR5470946.sra
Written 221775993 spots for SRR5470946/SRR5470946.sra
Read 223140853 spots for SRR5470947/SRR5470947.sra
Written 223140853 spots for SRR5470947/SRR5470947.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 20018314020 Mar 30 18:50 SRR5470947_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 14705927114 Mar 30 18:50 SRR5470947_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 19804595460 Mar 30 18:22 SRR5470946_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 14522547667 Mar 30 18:22 SRR5470946_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 19918933997 Mar 30 17:54 SRR5470945_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 18914076137 Mar 30 17:54 SRR5470945_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2755520.sum.gz
 output alignment file  :SRX2755520.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 53966 ms)
 -FM-Index for g2a genome.... finished (elapsed: 110839 ms)
 -suffix array for c2t genome.... finished (elapsed: 140314 ms)
 -suffix array for g2a genome.... finished (elapsed: 167989 ms)
 -reference sequence.... finished (elapsed: 170793 ms)
Index loading finished.
File(s) loaded: SRR5470945_1.fastq.gz, SRR5470945_2.fastq.gz.
File(s) loaded: SRR5470946_1.fastq.gz, SRR5470946_2.fastq.gz.
File(s) loaded: SRR5470947_1.fastq.gz, SRR5470947_2.fastq.gz.
Time elapsed:55238500 ms
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 64171444373 Mar 31 11:38 SRX2755520.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 12270337562 Mar 31 11:38 SRX2755520.sum.gz
SRX2755520.sum.gz was set to analysis list.
Analyzing SRX2755520.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6331 Mar 31 13:28 SRX2755520.mapsum.html
Processing "SRX2755520.bisulalign.gz" (64171444373 bytes)
****: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 13:58 SRX2755520.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      580866 Mar 31 14:07 SRX2755520.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2755520.graph
Output File (methyl)    :SRX2755520.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2755520.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2755520.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   245846551 Mar 31 14:21 SRX2755520.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   159807988 Mar 31 14:21 SRX2755520.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   270334176 Mar 31 14:21 SRX2755520.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   2173507 Mar 31 15:06 SRX2755520.hmr
-rw-r--r-- 1 okishinya so-ddmku     30796 Mar 31 15:06 SRX2755520.pmd
-rw-r--r-- 1 okishinya so-ddmku  10684285 Mar 31 15:06 SRX2755520.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 230255144 Mar 31 15:11 SRX2755520.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 197252350 Mar 31 15:08 SRX2755520.cpg.methyl.bw

=-=-=num_reads	664004903
=-=-=mapping_rate_1	0.853
=-=-=mapping_rate_2	0.825
=-=-=methyl_rate_cpg_total	0.69
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	90731
=-=-=partial_methyl_region	1282
=-=-=high_methyl_region	443541
=-=-=coverage	15.1112
=-=-=end	210331_15:11:59
=-=-=duration	21.752