Job ID = 12237436
SRX = SRX2755519
Genome = rm6
Started at	210330_17:19:02

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 186145399 spots for SRR5470942/SRR5470942.sra
Written 186145399 spots for SRR5470942/SRR5470942.sra
Read 185117832 spots for SRR5470943/SRR5470943.sra
Written 185117832 spots for SRR5470943/SRR5470943.sra
Read 190115038 spots for SRR5470944/SRR5470944.sra
Written 190115038 spots for SRR5470944/SRR5470944.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 16283874408 Mar 30 18:19 SRR5470944_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 11848133355 Mar 30 18:19 SRR5470944_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15940191534 Mar 30 17:59 SRR5470943_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 11502778351 Mar 30 17:59 SRR5470943_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 16082239530 Mar 30 17:39 SRR5470942_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15279662326 Mar 30 17:39 SRR5470942_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2755519.sum.gz
 output alignment file  :SRX2755519.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31138 ms)
 -FM-Index for g2a genome.... finished (elapsed: 62136 ms)
 -suffix array for c2t genome.... finished (elapsed: 90157 ms)
 -suffix array for g2a genome.... finished (elapsed: 118572 ms)
 -reference sequence.... finished (elapsed: 121224 ms)
Index loading finished.
File(s) loaded: SRR5470942_1.fastq.gz, SRR5470942_2.fastq.gz.
File(s) loaded: SRR5470943_1.fastq.gz, SRR5470943_2.fastq.gz.
File(s) loaded: SRR5470944_1.fastq.gz, SRR5470944_2.fastq.gz.
Time elapsed:57221749 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2755519’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 49328479157 Mar 31 11:12 SRX2755519.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 10566398909 Mar 31 11:12 SRX2755519.sum.gz
SRX2755519.sum.gz was set to analysis list.
Analyzing SRX2755519.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6422 Mar 31 12:26 SRX2755519.mapsum.html
Processing "SRX2755519.bisulalign.gz" (49328479157 bytes)
******: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 12:54 SRX2755519.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      574619 Mar 31 13:01 SRX2755519.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2755519.graph
Output File (methyl)    :SRX2755519.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2755519.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2755519.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   239428932 Mar 31 13:13 SRX2755519.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   123344620 Mar 31 13:13 SRX2755519.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   254095742 Mar 31 13:13 SRX2755519.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku   2063532 Mar 31 13:52 SRX2755519.hmr
-rw-r--r-- 1 okishinya so-ddmku     20525 Mar 31 13:52 SRX2755519.pmd
-rw-r--r-- 1 okishinya so-ddmku  11254985 Mar 31 13:52 SRX2755519.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 198186893 Mar 31 13:56 SRX2755519.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 158142154 Mar 31 13:54 SRX2755519.cpg.methyl.bw

=-=-=num_reads	561378242
=-=-=mapping_rate_1	0.866
=-=-=mapping_rate_2	0.843
=-=-=methyl_rate_cpg_total	0.683
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	86173
=-=-=partial_methyl_region	854
=-=-=high_methyl_region	467575
=-=-=coverage	10.7745
=-=-=end	210331_13:56:22
=-=-=duration	20.622