Job ID = 12237434
SRX = SRX2755518
Genome = rm6
Started at	210330_17:16:02

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 5044606 spots for SRR5470938/SRR5470938.sra
Written 5044606 spots for SRR5470938/SRR5470938.sra
Read 174874696 spots for SRR5470939/SRR5470939.sra
Written 174874696 spots for SRR5470939/SRR5470939.sra
Read 176586083 spots for SRR5470940/SRR5470940.sra
Written 176586083 spots for SRR5470940/SRR5470940.sra
Read 177589053 spots for SRR5470941/SRR5470941.sra
Written 177589053 spots for SRR5470941/SRR5470941.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 15174073454 Mar 30 18:23 SRR5470941_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 11199026063 Mar 30 18:23 SRR5470941_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15171713069 Mar 30 18:01 SRR5470940_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 11129646652 Mar 30 18:01 SRR5470940_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 15193385760 Mar 30 17:39 SRR5470939_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 14298574880 Mar 30 17:39 SRR5470939_2.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku   143077899 Mar 30 17:16 SRR5470938_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku   153033908 Mar 30 17:16 SRR5470938_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2755518.sum.gz
 output alignment file  :SRX2755518.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 54213 ms)
 -FM-Index for g2a genome.... finished (elapsed: 111491 ms)
 -suffix array for c2t genome.... finished (elapsed: 144569 ms)
 -suffix array for g2a genome.... finished (elapsed: 176617 ms)
 -reference sequence.... finished (elapsed: 179717 ms)
Index loading finished.
File(s) loaded: SRR5470938_1.fastq.gz, SRR5470938_2.fastq.gz.
File(s) loaded: SRR5470939_1.fastq.gz, SRR5470939_2.fastq.gz.
File(s) loaded: SRR5470940_1.fastq.gz, SRR5470940_2.fastq.gz.
File(s) loaded: SRR5470941_1.fastq.gz, SRR5470941_2.fastq.gz.
Time elapsed:41767883 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2755518’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 50232741773 Mar 31 07:09 SRX2755518.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  9871625197 Mar 31 07:09 SRX2755518.sum.gz
SRX2755518.sum.gz was set to analysis list.
Analyzing SRX2755518.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        6241 Mar 31 08:36 SRX2755518.mapsum.html
Processing "SRX2755518.bisulalign.gz" (50232741773 bytes)
**********************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 09:00 SRX2755518.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      576706 Mar 31 09:09 SRX2755518.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2755518.graph
Output File (methyl)    :SRX2755518.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2755518.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2755518.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   247374587 Mar 31 09:24 SRX2755518.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   196368342 Mar 31 09:24 SRX2755518.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   285544962 Mar 31 09:24 SRX2755518.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    1894206 Mar 31 10:32 SRX2755518.hmr
-rw-r--r-- 1 okishinya so-ddmku      52794 Mar 31 10:32 SRX2755518.pmd
-rw-r--r-- 1 okishinya so-ddmku    9660144 Mar 31 10:32 SRX2755518.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 263714451 Mar 31 10:38 SRX2755518.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 243243897 Mar 31 10:35 SRX2755518.cpg.methyl.bw

=-=-=num_reads	534094437
=-=-=mapping_rate_1	0.854
=-=-=mapping_rate_2	0.828
=-=-=methyl_rate_cpg_total	0.695
=-=-=methyl_rate_cpg_lambda	0
=-=-=low_methyl_region	79084
=-=-=partial_methyl_region	2202
=-=-=high_methyl_region	400708
=-=-=coverage	11.7539
=-=-=end	210331_10:39:18
=-=-=duration	17.387