Job ID = 12237369
SRX = SRX2745841
Genome = rm6
Started at	210330_15:00:20

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 68111637 spots for SRR5457794/SRR5457794.sra
Written 68111637 spots for SRR5457794/SRR5457794.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2604113277 Mar 30 15:06 SRR5457794_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2714208990 Mar 30 15:06 SRR5457794_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2745841.sum.gz
 output alignment file  :SRX2745841.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 29690 ms)
 -FM-Index for g2a genome.... finished (elapsed: 58892 ms)
 -suffix array for c2t genome.... finished (elapsed: 67288 ms)
 -suffix array for g2a genome.... finished (elapsed: 75392 ms)
 -reference sequence.... finished (elapsed: 75677 ms)
Index loading finished.
File(s) loaded: SRR5457794_1.fastq.gz, SRR5457794_2.fastq.gz.
Time elapsed:3772821 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2745841’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4564327378 Mar 30 16:13 SRX2745841.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1169982626 Mar 30 16:13 SRX2745841.sum.gz
SRX2745841.sum.gz was set to analysis list.
Analyzing SRX2745841.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4591 Mar 30 16:20 SRX2745841.mapsum.html
Processing "SRX2745841.bisulalign.gz" (4564327378 bytes)
******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:26 SRX2745841.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559927 Mar 30 16:31 SRX2745841.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2745841.graph
Output File (methyl)    :SRX2745841.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2745841.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2745841.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220901761 Mar 30 16:43 SRX2745841.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    31238329 Mar 30 16:43 SRX2745841.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   231046701 Mar 30 16:43 SRX2745841.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku        35 Mar 30 16:53 SRX2745841.hmr
-rw-r--r-- 1 okishinya so-ddmku         0 Mar 30 16:53 SRX2745841.pmd
-rw-r--r-- 1 okishinya so-ddmku   1392755 Mar 30 16:53 SRX2745841.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  40544423 Mar 30 16:55 SRX2745841.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  32832445 Mar 30 16:54 SRX2745841.cpg.methyl.bw

=-=-=num_reads	68111637
=-=-=mapping_rate_1	0.768
=-=-=mapping_rate_2	0.756
=-=-=methyl_rate_cpg_total	0.124
=-=-=methyl_rate_cpg_lambda	0.011
=-=-=low_methyl_region	1
=-=-=partial_methyl_region	0
=-=-=high_methyl_region	58050
=-=-=coverage	3.55439
=-=-=end	210330_16:55:29
=-=-=duration	1.919