Job ID = 12237382
SRX = SRX2745840
Genome = rm6
Started at	210330_15:35:53

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 73275217 spots for SRR5457793/SRR5457793.sra
Written 73275217 spots for SRR5457793/SRR5457793.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 2857250002 Mar 30 15:44 SRR5457793_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 2983159619 Mar 30 15:44 SRR5457793_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2745840.sum.gz
 output alignment file  :SRX2745840.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51777 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106425 ms)
 -suffix array for c2t genome.... finished (elapsed: 116551 ms)
 -suffix array for g2a genome.... finished (elapsed: 126438 ms)
 -reference sequence.... finished (elapsed: 126817 ms)
Index loading finished.
File(s) loaded: SRR5457793_1.fastq.gz, SRR5457793_2.fastq.gz.
Time elapsed:2950933 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2745840’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 5883227459 Mar 30 16:38 SRX2745840.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1275955046 Mar 30 16:38 SRX2745840.sum.gz
SRX2745840.sum.gz was set to analysis list.
Analyzing SRX2745840.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4767 Mar 30 16:49 SRX2745840.mapsum.html
Processing "SRX2745840.bisulalign.gz" (5883227459 bytes)
*******************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:55 SRX2745840.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      562462 Mar 30 17:02 SRX2745840.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2745840.graph
Output File (methyl)    :SRX2745840.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2745840.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2745840.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   221882648 Mar 30 17:15 SRX2745840.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    54020054 Mar 30 17:15 SRX2745840.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   234420243 Mar 30 17:15 SRX2745840.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku        31 Mar 30 17:36 SRX2745840.hmr
-rw-r--r-- 1 okishinya so-ddmku         0 Mar 30 17:36 SRX2745840.pmd
-rw-r--r-- 1 okishinya so-ddmku   2519130 Mar 30 17:36 SRX2745840.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  91490983 Mar 30 17:39 SRX2745840.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  35742275 Mar 30 17:37 SRX2745840.cpg.methyl.bw

=-=-=num_reads	73275217
=-=-=mapping_rate_1	0.767
=-=-=mapping_rate_2	0.756
=-=-=methyl_rate_cpg_total	0.121
=-=-=methyl_rate_cpg_lambda	0.004
=-=-=low_methyl_region	1
=-=-=partial_methyl_region	0
=-=-=high_methyl_region	105286
=-=-=coverage	3.45607
=-=-=end	210330_17:39:37
=-=-=duration	2.062