Job ID = 12237386
SRX = SRX2745839
Genome = rm6
Started at	210330_15:42:16

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 76168533 spots for SRR5457792/SRR5457792.sra
Written 76168533 spots for SRR5457792/SRR5457792.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3001961205 Mar 30 15:50 SRR5457792_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3123757200 Mar 30 15:50 SRR5457792_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2745839.sum.gz
 output alignment file  :SRX2745839.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 55599 ms)
 -FM-Index for g2a genome.... finished (elapsed: 113278 ms)
 -suffix array for c2t genome.... finished (elapsed: 147711 ms)
 -suffix array for g2a genome.... finished (elapsed: 170142 ms)
 -reference sequence.... finished (elapsed: 170517 ms)
Index loading finished.
File(s) loaded: SRR5457792_1.fastq.gz, SRR5457792_2.fastq.gz.
Time elapsed:4017196 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2745839’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4662325453 Mar 30 17:03 SRX2745839.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1289429902 Mar 30 17:03 SRX2745839.sum.gz
SRX2745839.sum.gz was set to analysis list.
Analyzing SRX2745839.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       5116 Mar 30 17:12 SRX2745839.mapsum.html
Processing "SRX2745839.bisulalign.gz" (4662325453 bytes)
*****************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:18 SRX2745839.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      557188 Mar 30 17:25 SRX2745839.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2745839.graph
Output File (methyl)    :SRX2745839.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2745839.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2745839.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku    90468810 Mar 30 17:38 SRX2745839.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   224068847 Mar 30 17:38 SRX2745839.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   248182630 Mar 30 17:38 SRX2745839.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    781732 Mar 30 18:03 SRX2745839.hmr
-rw-r--r-- 1 okishinya so-ddmku     53460 Mar 30 18:03 SRX2745839.pmd
-rw-r--r-- 1 okishinya so-ddmku   7752481 Mar 30 18:03 SRX2745839.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku 149625814 Mar 30 18:07 SRX2745839.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku 128876571 Mar 30 18:05 SRX2745839.cpg.methyl.bw

=-=-=num_reads	76168532
=-=-=mapping_rate_1	0.72
=-=-=mapping_rate_2	0.725
=-=-=methyl_rate_cpg_total	0.407
=-=-=methyl_rate_cpg_lambda	0.005
=-=-=low_methyl_region	32644
=-=-=partial_methyl_region	2236
=-=-=high_methyl_region	322987
=-=-=coverage	1.72407
=-=-=end	210330_18:07:41
=-=-=duration	2.423