Job ID = 12237393
SRX = SRX2745838
Genome = rm6
Started at	210330_15:45:54

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 82069236 spots for SRR5457791/SRR5457791.sra
Written 82069236 spots for SRR5457791/SRR5457791.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 3185298976 Mar 30 15:55 SRR5457791_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 3281475728 Mar 30 15:55 SRR5457791_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2745838.sum.gz
 output alignment file  :SRX2745838.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 51661 ms)
 -FM-Index for g2a genome.... finished (elapsed: 106196 ms)
 -suffix array for c2t genome.... finished (elapsed: 116171 ms)
 -suffix array for g2a genome.... finished (elapsed: 125922 ms)
 -reference sequence.... finished (elapsed: 126288 ms)
Index loading finished.
File(s) loaded: SRR5457791_1.fastq.gz, SRR5457791_2.fastq.gz.
Time elapsed:2851722 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2745838’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 4579596319 Mar 30 16:48 SRX2745838.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku 1448575702 Mar 30 16:48 SRX2745838.sum.gz
SRX2745838.sum.gz was set to analysis list.
Analyzing SRX2745838.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku       4689 Mar 30 16:57 SRX2745838.mapsum.html
Processing "SRX2745838.bisulalign.gz" (4579596319 bytes)
******************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:03 SRX2745838.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      559898 Mar 30 17:09 SRX2745838.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2745838.graph
Output File (methyl)    :SRX2745838.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2745838.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2745838.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   220772216 Mar 30 17:21 SRX2745838.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku    24740715 Mar 30 17:21 SRX2745838.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   230996305 Mar 30 17:21 SRX2745838.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    399189 Mar 30 17:28 SRX2745838.hmr
-rw-r--r-- 1 okishinya so-ddmku       635 Mar 30 17:28 SRX2745838.pmd
-rw-r--r-- 1 okishinya so-ddmku   3134126 Mar 30 17:28 SRX2745838.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  32519601 Mar 30 17:30 SRX2745838.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  29710530 Mar 30 17:29 SRX2745838.cpg.methyl.bw

=-=-=num_reads	82069236
=-=-=mapping_rate_1	0.781
=-=-=mapping_rate_2	0.779
=-=-=methyl_rate_cpg_total	0.322
=-=-=methyl_rate_cpg_lambda	0.016
=-=-=low_methyl_region	16664
=-=-=partial_methyl_region	27
=-=-=high_methyl_region	130813
=-=-=coverage	4.32321
=-=-=end	210330_17:30:42
=-=-=duration	1.746