Job ID = 12237327 SRX = SRX2732287 Genome = rm6 Started at 210330_14:51:44 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 6502831 spots for SRR5442893/SRR5442893.sra Written 6502831 spots for SRR5442893/SRR5442893.sra Read 6235625 spots for SRR5442894/SRR5442894.sra Written 6235625 spots for SRR5442894/SRR5442894.sra Read 6490427 spots for SRR5442895/SRR5442895.sra Written 6490427 spots for SRR5442895/SRR5442895.sra Read 6513227 spots for SRR5442896/SRR5442896.sra Written 6513227 spots for SRR5442896/SRR5442896.sra Read 6283957 spots for SRR5442897/SRR5442897.sra Written 6283957 spots for SRR5442897/SRR5442897.sra Read 6075500 spots for SRR5442898/SRR5442898.sra Written 6075500 spots for SRR5442898/SRR5442898.sra Read 6459589 spots for SRR5442899/SRR5442899.sra Written 6459589 spots for SRR5442899/SRR5442899.sra Read 6216244 spots for SRR5442900/SRR5442900.sra Written 6216244 spots for SRR5442900/SRR5442900.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 329390991 Mar 30 14:59 SRR5442900_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 364695012 Mar 30 14:59 SRR5442900_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 342378919 Mar 30 14:58 SRR5442899_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 368119677 Mar 30 14:58 SRR5442899_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 323831826 Mar 30 14:57 SRR5442898_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 357397016 Mar 30 14:57 SRR5442898_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 336110091 Mar 30 14:56 SRR5442897_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 367283142 Mar 30 14:56 SRR5442897_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 353524911 Mar 30 14:55 SRR5442896_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 398488041 Mar 30 14:55 SRR5442896_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 353075159 Mar 30 14:54 SRR5442895_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 397200041 Mar 30 14:54 SRR5442895_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 346209888 Mar 30 14:53 SRR5442894_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 389176295 Mar 30 14:53 SRR5442894_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 357711813 Mar 30 14:52 SRR5442893_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 406007164 Mar 30 14:52 SRR5442893_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732287.sum.gz output alignment file :SRX2732287.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 34887 ms) -FM-Index for g2a genome.... finished (elapsed: 69931 ms) -suffix array for c2t genome.... finished (elapsed: 79096 ms) -suffix array for g2a genome.... finished (elapsed: 87983 ms) -reference sequence.... finished (elapsed: 88248 ms) Index loading finished. File(s) loaded: SRR5442893_1.fastq.gz, SRR5442893_2.fastq.gz. File(s) loaded: SRR5442894_1.fastq.gz, SRR5442894_2.fastq.gz. File(s) loaded: SRR5442895_1.fastq.gz, SRR5442895_2.fastq.gz. File(s) loaded: SRR5442896_1.fastq.gz, SRR5442896_2.fastq.gz. File(s) loaded: SRR5442897_1.fastq.gz, SRR5442897_2.fastq.gz. File(s) loaded: SRR5442898_1.fastq.gz, SRR5442898_2.fastq.gz. File(s) loaded: SRR5442899_1.fastq.gz, SRR5442899_2.fastq.gz. File(s) loaded: SRR5442900_1.fastq.gz, SRR5442900_2.fastq.gz. Time elapsed:4956376 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732287’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 5159130020 Mar 30 16:29 SRX2732287.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1080045791 Mar 30 16:29 SRX2732287.sum.gz SRX2732287.sum.gz was set to analysis list. Analyzing SRX2732287.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4935 Mar 30 16:39 SRX2732287.mapsum.html Processing "SRX2732287.bisulalign.gz" (5159130020 bytes) ***********************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:45 SRX2732287.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 563220 Mar 30 16:52 SRX2732287.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732287.graph Output File (methyl) :SRX2732287.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732287.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732287.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 223433203 Mar 30 17:06 SRX2732287.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 38936586 Mar 30 17:06 SRX2732287.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 231470126 Mar 30 17:06 SRX2732287.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 750454 Mar 30 17:29 SRX2732287.hmr -rw-r--r-- 1 okishinya so-ddmku 12504 Mar 30 17:29 SRX2732287.pmd -rw-r--r-- 1 okishinya so-ddmku 9035385 Mar 30 17:29 SRX2732287.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 61717418 Mar 30 17:32 SRX2732287.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 47985559 Mar 30 17:31 SRX2732287.cpg.methyl.bw =-=-=num_reads 50777388 =-=-=mapping_rate_1 0.882 =-=-=mapping_rate_2 0.841 =-=-=methyl_rate_cpg_total 0.747 =-=-=methyl_rate_cpg_lambda 0.97 =-=-=low_methyl_region 31336 =-=-=partial_methyl_region 520 =-=-=high_methyl_region 376639 =-=-=coverage 1.32375 =-=-=end 210330_17:32:56 =-=-=duration 2.686