Job ID = 12237335 SRX = SRX2732286 Genome = rm6 Started at 210330_14:53:59 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7135440 spots for SRR5442885/SRR5442885.sra Written 7135440 spots for SRR5442885/SRR5442885.sra Read 6851197 spots for SRR5442886/SRR5442886.sra Written 6851197 spots for SRR5442886/SRR5442886.sra Read 7121362 spots for SRR5442887/SRR5442887.sra Written 7121362 spots for SRR5442887/SRR5442887.sra Read 7130641 spots for SRR5442888/SRR5442888.sra Written 7130641 spots for SRR5442888/SRR5442888.sra Read 6873631 spots for SRR5442889/SRR5442889.sra Written 6873631 spots for SRR5442889/SRR5442889.sra Read 6607683 spots for SRR5442890/SRR5442890.sra Written 6607683 spots for SRR5442890/SRR5442890.sra Read 7042583 spots for SRR5442891/SRR5442891.sra Written 7042583 spots for SRR5442891/SRR5442891.sra Read 6761195 spots for SRR5442892/SRR5442892.sra Written 6761195 spots for SRR5442892/SRR5442892.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 368469402 Mar 30 15:00 SRR5442892_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 408894253 Mar 30 15:00 SRR5442892_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 384030651 Mar 30 14:59 SRR5442891_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 413908213 Mar 30 14:59 SRR5442891_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 362130265 Mar 30 14:58 SRR5442890_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 400573151 Mar 30 14:58 SRR5442890_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 378385409 Mar 30 14:57 SRR5442889_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 414131397 Mar 30 14:57 SRR5442889_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 399001385 Mar 30 14:57 SRR5442888_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 449758663 Mar 30 14:57 SRR5442888_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 399409469 Mar 30 14:56 SRR5442887_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 449289118 Mar 30 14:56 SRR5442887_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 392167521 Mar 30 14:55 SRR5442886_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 440542519 Mar 30 14:55 SRR5442886_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 404819275 Mar 30 14:54 SRR5442885_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 459243467 Mar 30 14:54 SRR5442885_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732286.sum.gz output alignment file :SRX2732286.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 30240 ms) -FM-Index for g2a genome.... finished (elapsed: 60166 ms) -suffix array for c2t genome.... finished (elapsed: 74710 ms) -suffix array for g2a genome.... finished (elapsed: 89836 ms) -reference sequence.... finished (elapsed: 90997 ms) Index loading finished. File(s) loaded: SRR5442885_1.fastq.gz, SRR5442885_2.fastq.gz. File(s) loaded: SRR5442886_1.fastq.gz, SRR5442886_2.fastq.gz. File(s) loaded: SRR5442887_1.fastq.gz, SRR5442887_2.fastq.gz. File(s) loaded: SRR5442888_1.fastq.gz, SRR5442888_2.fastq.gz. File(s) loaded: SRR5442889_1.fastq.gz, SRR5442889_2.fastq.gz. File(s) loaded: SRR5442890_1.fastq.gz, SRR5442890_2.fastq.gz. File(s) loaded: SRR5442891_1.fastq.gz, SRR5442891_2.fastq.gz. File(s) loaded: SRR5442892_1.fastq.gz, SRR5442892_2.fastq.gz. Time elapsed:6336546 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732286’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 6349015036 Mar 30 16:51 SRX2732286.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1187561537 Mar 30 16:51 SRX2732286.sum.gz SRX2732286.sum.gz was set to analysis list. Analyzing SRX2732286.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5113 Mar 30 17:00 SRX2732286.mapsum.html Processing "SRX2732286.bisulalign.gz" (6349015036 bytes) ******************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:05 SRX2732286.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 565371 Mar 30 17:11 SRX2732286.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732286.graph Output File (methyl) :SRX2732286.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732286.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732286.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 224231243 Mar 30 17:23 SRX2732286.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 52824293 Mar 30 17:23 SRX2732286.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 234856632 Mar 30 17:23 SRX2732286.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 630159 Mar 30 17:45 SRX2732286.hmr -rw-r--r-- 1 okishinya so-ddmku 15868 Mar 30 17:45 SRX2732286.pmd -rw-r--r-- 1 okishinya so-ddmku 11198600 Mar 30 17:45 SRX2732286.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 78506394 Mar 30 17:48 SRX2732286.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 61145297 Mar 30 17:46 SRX2732286.cpg.methyl.bw =-=-=num_reads 55523731 =-=-=mapping_rate_1 0.89 =-=-=mapping_rate_2 0.85 =-=-=methyl_rate_cpg_total 0.737 =-=-=methyl_rate_cpg_lambda 0.971 =-=-=low_methyl_region 26315 =-=-=partial_methyl_region 660 =-=-=high_methyl_region 466779 =-=-=coverage 1.56984 =-=-=end 210330_17:48:09 =-=-=duration 2.902