Job ID = 12237317 SRX = SRX2732285 Genome = rm6 Started at 210330_14:51:29 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 5895901 spots for SRR5442877/SRR5442877.sra Written 5895901 spots for SRR5442877/SRR5442877.sra Read 5669444 spots for SRR5442878/SRR5442878.sra Written 5669444 spots for SRR5442878/SRR5442878.sra Read 5876986 spots for SRR5442879/SRR5442879.sra Written 5876986 spots for SRR5442879/SRR5442879.sra Read 5897314 spots for SRR5442880/SRR5442880.sra Written 5897314 spots for SRR5442880/SRR5442880.sra Read 5816706 spots for SRR5442881/SRR5442881.sra Written 5816706 spots for SRR5442881/SRR5442881.sra Read 5614034 spots for SRR5442882/SRR5442882.sra Written 5614034 spots for SRR5442882/SRR5442882.sra Read 5960224 spots for SRR5442883/SRR5442883.sra Written 5960224 spots for SRR5442883/SRR5442883.sra Read 5739487 spots for SRR5442884/SRR5442884.sra Written 5739487 spots for SRR5442884/SRR5442884.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 314911542 Mar 30 14:59 SRR5442884_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 349763196 Mar 30 14:59 SRR5442884_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 327021971 Mar 30 14:58 SRR5442883_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 352756434 Mar 30 14:58 SRR5442883_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 309792848 Mar 30 14:57 SRR5442882_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 343043610 Mar 30 14:57 SRR5442882_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 322150883 Mar 30 14:56 SRR5442881_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 352843121 Mar 30 14:56 SRR5442881_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 331812662 Mar 30 14:55 SRR5442880_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 374081907 Mar 30 14:55 SRR5442880_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 331128449 Mar 30 14:54 SRR5442879_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 372620845 Mar 30 14:54 SRR5442879_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 326381520 Mar 30 14:53 SRR5442878_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 366652934 Mar 30 14:53 SRR5442878_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 336027171 Mar 30 14:52 SRR5442877_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 381313833 Mar 30 14:52 SRR5442877_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732285.sum.gz output alignment file :SRX2732285.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 36075 ms) -FM-Index for g2a genome.... finished (elapsed: 72192 ms) -suffix array for c2t genome.... finished (elapsed: 87516 ms) -suffix array for g2a genome.... finished (elapsed: 102291 ms) -reference sequence.... finished (elapsed: 103370 ms) Index loading finished. File(s) loaded: SRR5442877_1.fastq.gz, SRR5442877_2.fastq.gz. File(s) loaded: SRR5442878_1.fastq.gz, SRR5442878_2.fastq.gz. File(s) loaded: SRR5442879_1.fastq.gz, SRR5442879_2.fastq.gz. File(s) loaded: SRR5442880_1.fastq.gz, SRR5442880_2.fastq.gz. File(s) loaded: SRR5442881_1.fastq.gz, SRR5442881_2.fastq.gz. File(s) loaded: SRR5442882_1.fastq.gz, SRR5442882_2.fastq.gz. File(s) loaded: SRR5442883_1.fastq.gz, SRR5442883_2.fastq.gz. File(s) loaded: SRR5442884_1.fastq.gz, SRR5442884_2.fastq.gz. Time elapsed:5188766 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732285’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 5360397858 Mar 30 16:32 SRX2732285.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 986100839 Mar 30 16:32 SRX2732285.sum.gz SRX2732285.sum.gz was set to analysis list. Analyzing SRX2732285.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5032 Mar 30 16:42 SRX2732285.mapsum.html Processing "SRX2732285.bisulalign.gz" (5360397858 bytes) ************************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:49 SRX2732285.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 563241 Mar 30 16:57 SRX2732285.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732285.graph Output File (methyl) :SRX2732285.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732285.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732285.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 222967378 Mar 30 17:11 SRX2732285.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 26893611 Mar 30 17:11 SRX2732285.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 228371412 Mar 30 17:11 SRX2732285.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 594048 Mar 30 17:26 SRX2732285.hmr -rw-r--r-- 1 okishinya so-ddmku 7981 Mar 30 17:26 SRX2732285.pmd -rw-r--r-- 1 okishinya so-ddmku 6724357 Mar 30 17:26 SRX2732285.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 47006305 Mar 30 17:29 SRX2732285.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 35674575 Mar 30 17:27 SRX2732285.cpg.methyl.bw =-=-=num_reads 46470095 =-=-=mapping_rate_1 0.88 =-=-=mapping_rate_2 0.835 =-=-=methyl_rate_cpg_total 0.732 =-=-=methyl_rate_cpg_lambda 0.971 =-=-=low_methyl_region 24809 =-=-=partial_methyl_region 331 =-=-=high_methyl_region 280179 =-=-=coverage 1.28759 =-=-=end 210330_17:29:12 =-=-=duration 2.628