Job ID = 12237331 SRX = SRX2732284 Genome = rm6 Started at 210330_14:52:59 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 6973999 spots for SRR5442869/SRR5442869.sra Written 6973999 spots for SRR5442869/SRR5442869.sra Read 6701729 spots for SRR5442870/SRR5442870.sra Written 6701729 spots for SRR5442870/SRR5442870.sra Read 6969453 spots for SRR5442871/SRR5442871.sra Written 6969453 spots for SRR5442871/SRR5442871.sra Read 6982799 spots for SRR5442872/SRR5442872.sra Written 6982799 spots for SRR5442872/SRR5442872.sra Read 6695397 spots for SRR5442873/SRR5442873.sra Written 6695397 spots for SRR5442873/SRR5442873.sra Read 6445543 spots for SRR5442874/SRR5442874.sra Written 6445543 spots for SRR5442874/SRR5442874.sra Read 6867656 spots for SRR5442875/SRR5442875.sra Written 6867656 spots for SRR5442875/SRR5442875.sra Read 6601487 spots for SRR5442876/SRR5442876.sra Written 6601487 spots for SRR5442876/SRR5442876.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 361321801 Mar 30 15:00 SRR5442876_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 402746475 Mar 30 15:00 SRR5442876_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 376086853 Mar 30 14:59 SRR5442875_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 407749252 Mar 30 14:59 SRR5442875_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 354956999 Mar 30 14:58 SRR5442874_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 394440131 Mar 30 14:58 SRR5442874_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 370247215 Mar 30 14:57 SRR5442873_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 407771400 Mar 30 14:57 SRR5442873_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 392891645 Mar 30 14:56 SRR5442872_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 442987769 Mar 30 14:56 SRR5442872_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 393035064 Mar 30 14:55 SRR5442871_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 442410997 Mar 30 14:55 SRR5442871_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 386147395 Mar 30 14:55 SRR5442870_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 433564464 Mar 30 14:55 SRR5442870_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 397981656 Mar 30 14:54 SRR5442869_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 451679290 Mar 30 14:54 SRR5442869_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732284.sum.gz output alignment file :SRX2732284.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 53662 ms) -FM-Index for g2a genome.... finished (elapsed: 109605 ms) -suffix array for c2t genome.... finished (elapsed: 121828 ms) -suffix array for g2a genome.... finished (elapsed: 133560 ms) -reference sequence.... finished (elapsed: 133977 ms) Index loading finished. File(s) loaded: SRR5442869_1.fastq.gz, SRR5442869_2.fastq.gz. File(s) loaded: SRR5442870_1.fastq.gz, SRR5442870_2.fastq.gz. File(s) loaded: SRR5442871_1.fastq.gz, SRR5442871_2.fastq.gz. File(s) loaded: SRR5442872_1.fastq.gz, SRR5442872_2.fastq.gz. File(s) loaded: SRR5442873_1.fastq.gz, SRR5442873_2.fastq.gz. File(s) loaded: SRR5442874_1.fastq.gz, SRR5442874_2.fastq.gz. File(s) loaded: SRR5442875_1.fastq.gz, SRR5442875_2.fastq.gz. File(s) loaded: SRR5442876_1.fastq.gz, SRR5442876_2.fastq.gz. Time elapsed:7137578 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732284’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 6285575631 Mar 30 17:07 SRX2732284.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1164687860 Mar 30 17:07 SRX2732284.sum.gz SRX2732284.sum.gz was set to analysis list. Analyzing SRX2732284.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5107 Mar 30 17:18 SRX2732284.mapsum.html Processing "SRX2732284.bisulalign.gz" (6285575631 bytes) *****************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:23 SRX2732284.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 565352 Mar 30 17:30 SRX2732284.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732284.graph Output File (methyl) :SRX2732284.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732284.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732284.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 224267991 Mar 30 17:44 SRX2732284.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 54538419 Mar 30 17:44 SRX2732284.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 235270499 Mar 30 17:44 SRX2732284.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 647552 Mar 30 18:12 SRX2732284.hmr -rw-r--r-- 1 okishinya so-ddmku 15634 Mar 30 18:12 SRX2732284.pmd -rw-r--r-- 1 okishinya so-ddmku 11516106 Mar 30 18:12 SRX2732284.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 80728799 Mar 30 18:15 SRX2732284.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 63053786 Mar 30 18:14 SRX2732284.cpg.methyl.bw =-=-=num_reads 54238062 =-=-=mapping_rate_1 0.892 =-=-=mapping_rate_2 0.848 =-=-=methyl_rate_cpg_total 0.742 =-=-=methyl_rate_cpg_lambda 0.971 =-=-=low_methyl_region 27031 =-=-=partial_methyl_region 652 =-=-=high_methyl_region 479967 =-=-=coverage 1.50835 =-=-=end 210330_18:16:05 =-=-=duration 3.385