Job ID = 12237326 SRX = SRX2732283 Genome = rm6 Started at 210330_14:51:44 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 6432497 spots for SRR5442861/SRR5442861.sra Written 6432497 spots for SRR5442861/SRR5442861.sra Read 6170907 spots for SRR5442862/SRR5442862.sra Written 6170907 spots for SRR5442862/SRR5442862.sra Read 6410108 spots for SRR5442863/SRR5442863.sra Written 6410108 spots for SRR5442863/SRR5442863.sra Read 6431055 spots for SRR5442864/SRR5442864.sra Written 6431055 spots for SRR5442864/SRR5442864.sra Read 6183527 spots for SRR5442865/SRR5442865.sra Written 6183527 spots for SRR5442865/SRR5442865.sra Read 5981623 spots for SRR5442866/SRR5442866.sra Written 5981623 spots for SRR5442866/SRR5442866.sra Read 6344500 spots for SRR5442867/SRR5442867.sra Written 6344500 spots for SRR5442867/SRR5442867.sra Read 6106279 spots for SRR5442868/SRR5442868.sra Written 6106279 spots for SRR5442868/SRR5442868.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 331702798 Mar 30 14:59 SRR5442868_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 367324571 Mar 30 14:59 SRR5442868_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 344806350 Mar 30 14:58 SRR5442867_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 370784626 Mar 30 14:58 SRR5442867_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 326732979 Mar 30 14:57 SRR5442866_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 360568934 Mar 30 14:57 SRR5442866_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 339167064 Mar 30 14:56 SRR5442865_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 370434355 Mar 30 14:56 SRR5442865_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 358355034 Mar 30 14:55 SRR5442864_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 403885351 Mar 30 14:55 SRR5442864_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 357856186 Mar 30 14:54 SRR5442863_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 402660507 Mar 30 14:54 SRR5442863_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 351621956 Mar 30 14:53 SRR5442862_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 395039975 Mar 30 14:53 SRR5442862_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 363189397 Mar 30 14:52 SRR5442861_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 412192477 Mar 30 14:52 SRR5442861_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732283.sum.gz output alignment file :SRX2732283.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 35096 ms) -FM-Index for g2a genome.... finished (elapsed: 70258 ms) -suffix array for c2t genome.... finished (elapsed: 78274 ms) -suffix array for g2a genome.... finished (elapsed: 86080 ms) -reference sequence.... finished (elapsed: 86326 ms) Index loading finished. File(s) loaded: SRR5442861_1.fastq.gz, SRR5442861_2.fastq.gz. File(s) loaded: SRR5442862_1.fastq.gz, SRR5442862_2.fastq.gz. File(s) loaded: SRR5442863_1.fastq.gz, SRR5442863_2.fastq.gz. File(s) loaded: SRR5442864_1.fastq.gz, SRR5442864_2.fastq.gz. File(s) loaded: SRR5442865_1.fastq.gz, SRR5442865_2.fastq.gz. File(s) loaded: SRR5442866_1.fastq.gz, SRR5442866_2.fastq.gz. File(s) loaded: SRR5442867_1.fastq.gz, SRR5442867_2.fastq.gz. File(s) loaded: SRR5442868_1.fastq.gz, SRR5442868_2.fastq.gz. Time elapsed:4648686 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732283’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 5637878344 Mar 30 16:24 SRX2732283.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1075027130 Mar 30 16:24 SRX2732283.sum.gz SRX2732283.sum.gz was set to analysis list. Analyzing SRX2732283.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5267 Mar 30 16:35 SRX2732283.mapsum.html Processing "SRX2732283.bisulalign.gz" (5637878344 bytes) *********: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 16:41 SRX2732283.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 563293 Mar 30 16:48 SRX2732283.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732283.graph Output File (methyl) :SRX2732283.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732283.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732283.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 223525032 Mar 30 17:02 SRX2732283.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 35712647 Mar 30 17:02 SRX2732283.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 230654110 Mar 30 17:02 SRX2732283.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 723743 Mar 30 17:23 SRX2732283.hmr -rw-r--r-- 1 okishinya so-ddmku 9446 Mar 30 17:23 SRX2732283.pmd -rw-r--r-- 1 okishinya so-ddmku 8525784 Mar 30 17:23 SRX2732283.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 57812310 Mar 30 17:26 SRX2732283.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 44455824 Mar 30 17:25 SRX2732283.cpg.methyl.bw =-=-=num_reads 50060491 =-=-=mapping_rate_1 0.893 =-=-=mapping_rate_2 0.851 =-=-=methyl_rate_cpg_total 0.736 =-=-=methyl_rate_cpg_lambda 0.963 =-=-=low_methyl_region 30230 =-=-=partial_methyl_region 395 =-=-=high_methyl_region 355353 =-=-=coverage 1.40796 =-=-=end 210330_17:26:48 =-=-=duration 2.584