Job ID = 12237370 SRX = SRX2732282 Genome = rm6 Started at 210330_15:00:50 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 5534972 spots for SRR5442853/SRR5442853.sra Written 5534972 spots for SRR5442853/SRR5442853.sra Read 5427006 spots for SRR5442854/SRR5442854.sra Written 5427006 spots for SRR5442854/SRR5442854.sra Read 5492285 spots for SRR5442855/SRR5442855.sra Written 5492285 spots for SRR5442855/SRR5442855.sra Read 5602739 spots for SRR5442856/SRR5442856.sra Written 5602739 spots for SRR5442856/SRR5442856.sra Read 11577847 spots for SRR5442857/SRR5442857.sra Written 11577847 spots for SRR5442857/SRR5442857.sra Read 11088827 spots for SRR5442858/SRR5442858.sra Written 11088827 spots for SRR5442858/SRR5442858.sra Read 11971166 spots for SRR5442859/SRR5442859.sra Written 11971166 spots for SRR5442859/SRR5442859.sra Read 11454804 spots for SRR5442860/SRR5442860.sra Written 11454804 spots for SRR5442860/SRR5442860.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 602410460 Mar 30 15:08 SRR5442860_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 684305963 Mar 30 15:08 SRR5442860_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 632036388 Mar 30 15:07 SRR5442859_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 721572356 Mar 30 15:07 SRR5442859_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 594014444 Mar 30 15:06 SRR5442858_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 691130827 Mar 30 15:06 SRR5442858_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 619984600 Mar 30 15:04 SRR5442857_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 721134399 Mar 30 15:04 SRR5442857_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 285378669 Mar 30 15:03 SRR5442856_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 320212282 Mar 30 15:03 SRR5442856_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 279820914 Mar 30 15:02 SRR5442855_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 311454874 Mar 30 15:02 SRR5442855_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 277665905 Mar 30 15:02 SRR5442854_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 312069089 Mar 30 15:02 SRR5442854_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 283153967 Mar 30 15:01 SRR5442853_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 317379644 Mar 30 15:01 SRR5442853_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732282.sum.gz output alignment file :SRX2732282.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 32574 ms) -FM-Index for g2a genome.... finished (elapsed: 64943 ms) -suffix array for c2t genome.... finished (elapsed: 73296 ms) -suffix array for g2a genome.... finished (elapsed: 81433 ms) -reference sequence.... finished (elapsed: 81747 ms) Index loading finished. File(s) loaded: SRR5442853_1.fastq.gz, SRR5442853_2.fastq.gz. File(s) loaded: SRR5442854_1.fastq.gz, SRR5442854_2.fastq.gz. File(s) loaded: SRR5442855_1.fastq.gz, SRR5442855_2.fastq.gz. File(s) loaded: SRR5442856_1.fastq.gz, SRR5442856_2.fastq.gz. File(s) loaded: SRR5442857_1.fastq.gz, SRR5442857_2.fastq.gz. File(s) loaded: SRR5442858_1.fastq.gz, SRR5442858_2.fastq.gz. File(s) loaded: SRR5442859_1.fastq.gz, SRR5442859_2.fastq.gz. File(s) loaded: SRR5442860_1.fastq.gz, SRR5442860_2.fastq.gz. Time elapsed:7267952 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732282’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 6304814679 Mar 30 17:17 SRX2732282.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1440396774 Mar 30 17:17 SRX2732282.sum.gz SRX2732282.sum.gz was set to analysis list. Analyzing SRX2732282.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5361 Mar 30 17:26 SRX2732282.mapsum.html Processing "SRX2732282.bisulalign.gz" (6304814679 bytes) ******************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:32 SRX2732282.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 565243 Mar 30 17:37 SRX2732282.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732282.graph Output File (methyl) :SRX2732282.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732282.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732282.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 223617480 Mar 30 17:48 SRX2732282.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 29912089 Mar 30 17:48 SRX2732282.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 229448516 Mar 30 17:48 SRX2732282.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 606619 Mar 30 18:00 SRX2732282.hmr -rw-r--r-- 1 okishinya so-ddmku 7973 Mar 30 18:00 SRX2732282.pmd -rw-r--r-- 1 okishinya so-ddmku 7119707 Mar 30 18:00 SRX2732282.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 50757032 Mar 30 18:02 SRX2732282.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 39306615 Mar 30 18:01 SRX2732282.cpg.methyl.bw =-=-=num_reads 68149645 =-=-=mapping_rate_1 0.886 =-=-=mapping_rate_2 0.843 =-=-=methyl_rate_cpg_total 0.745 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 25325 =-=-=partial_methyl_region 332 =-=-=high_methyl_region 296704 =-=-=coverage 1.66951 =-=-=end 210330_18:02:38 =-=-=duration 3.030