Job ID = 12237375 SRX = SRX2732281 Genome = rm6 Started at 210330_15:01:35 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 5573385 spots for SRR5442845/SRR5442845.sra Written 5573385 spots for SRR5442845/SRR5442845.sra Read 5495453 spots for SRR5442846/SRR5442846.sra Written 5495453 spots for SRR5442846/SRR5442846.sra Read 5503733 spots for SRR5442847/SRR5442847.sra Written 5503733 spots for SRR5442847/SRR5442847.sra Read 5619587 spots for SRR5442848/SRR5442848.sra Written 5619587 spots for SRR5442848/SRR5442848.sra Read 11809115 spots for SRR5442849/SRR5442849.sra Written 11809115 spots for SRR5442849/SRR5442849.sra Read 11372927 spots for SRR5442850/SRR5442850.sra Written 11372927 spots for SRR5442850/SRR5442850.sra Read 12173283 spots for SRR5442851/SRR5442851.sra Written 12173283 spots for SRR5442851/SRR5442851.sra Read 11804627 spots for SRR5442852/SRR5442852.sra Written 11804627 spots for SRR5442852/SRR5442852.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 655721028 Mar 30 15:10 SRR5442852_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 742533021 Mar 30 15:10 SRR5442852_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 678427097 Mar 30 15:09 SRR5442851_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 773492819 Mar 30 15:09 SRR5442851_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 644795716 Mar 30 15:07 SRR5442850_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 743889372 Mar 30 15:07 SRR5442850_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 667920988 Mar 30 15:06 SRR5442849_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 773094864 Mar 30 15:06 SRR5442849_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 303338499 Mar 30 15:04 SRR5442848_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 339767614 Mar 30 15:04 SRR5442848_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 296816156 Mar 30 15:03 SRR5442847_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 330320561 Mar 30 15:03 SRR5442847_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 298033759 Mar 30 15:03 SRR5442846_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 334408540 Mar 30 15:03 SRR5442846_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 301958027 Mar 30 15:02 SRR5442845_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 338237262 Mar 30 15:02 SRR5442845_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732281.sum.gz output alignment file :SRX2732281.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 52180 ms) -FM-Index for g2a genome.... finished (elapsed: 106785 ms) -suffix array for c2t genome.... finished (elapsed: 117326 ms) -suffix array for g2a genome.... finished (elapsed: 127938 ms) -reference sequence.... finished (elapsed: 128322 ms) Index loading finished. File(s) loaded: SRR5442845_1.fastq.gz, SRR5442845_2.fastq.gz. File(s) loaded: SRR5442846_1.fastq.gz, SRR5442846_2.fastq.gz. File(s) loaded: SRR5442847_1.fastq.gz, SRR5442847_2.fastq.gz. File(s) loaded: SRR5442848_1.fastq.gz, SRR5442848_2.fastq.gz. File(s) loaded: SRR5442849_1.fastq.gz, SRR5442849_2.fastq.gz. File(s) loaded: SRR5442850_1.fastq.gz, SRR5442850_2.fastq.gz. File(s) loaded: SRR5442851_1.fastq.gz, SRR5442851_2.fastq.gz. File(s) loaded: SRR5442852_1.fastq.gz, SRR5442852_2.fastq.gz. Time elapsed:5897384 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732281’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8150426070 Mar 30 16:58 SRX2732281.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1490883841 Mar 30 16:58 SRX2732281.sum.gz SRX2732281.sum.gz was set to analysis list. Analyzing SRX2732281.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5532 Mar 30 17:12 SRX2732281.mapsum.html Processing "SRX2732281.bisulalign.gz" (8150426070 bytes) **********************************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:19 SRX2732281.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 567422 Mar 30 17:25 SRX2732281.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732281.graph Output File (methyl) :SRX2732281.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732281.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732281.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225288797 Mar 30 17:38 SRX2732281.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 50870919 Mar 30 17:38 SRX2732281.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 234835778 Mar 30 17:38 SRX2732281.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 849655 Mar 30 18:03 SRX2732281.hmr -rw-r--r-- 1 okishinya so-ddmku 15642 Mar 30 18:03 SRX2732281.pmd -rw-r--r-- 1 okishinya so-ddmku 10435922 Mar 30 18:03 SRX2732281.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 75747808 Mar 30 18:06 SRX2732281.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 58731618 Mar 30 18:04 SRX2732281.cpg.methyl.bw =-=-=num_reads 69352108 =-=-=mapping_rate_1 0.892 =-=-=mapping_rate_2 0.848 =-=-=methyl_rate_cpg_total 0.73 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 35469 =-=-=partial_methyl_region 649 =-=-=high_methyl_region 434843 =-=-=coverage 2.00218 =-=-=end 210330_18:06:24 =-=-=duration 3.080