Job ID = 12237367 SRX = SRX2732280 Genome = rm6 Started at 210330_15:00:20 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 5414419 spots for SRR5442837/SRR5442837.sra Written 5414419 spots for SRR5442837/SRR5442837.sra Read 5312122 spots for SRR5442838/SRR5442838.sra Written 5312122 spots for SRR5442838/SRR5442838.sra Read 5361424 spots for SRR5442839/SRR5442839.sra Written 5361424 spots for SRR5442839/SRR5442839.sra Read 5469235 spots for SRR5442840/SRR5442840.sra Written 5469235 spots for SRR5442840/SRR5442840.sra Read 11618578 spots for SRR5442841/SRR5442841.sra Written 11618578 spots for SRR5442841/SRR5442841.sra Read 11156074 spots for SRR5442842/SRR5442842.sra Written 11156074 spots for SRR5442842/SRR5442842.sra Read 12011793 spots for SRR5442843/SRR5442843.sra Written 12011793 spots for SRR5442843/SRR5442843.sra Read 11511909 spots for SRR5442844/SRR5442844.sra Written 11511909 spots for SRR5442844/SRR5442844.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 629712279 Mar 30 15:08 SRR5442844_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 715829340 Mar 30 15:08 SRR5442844_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 658789942 Mar 30 15:06 SRR5442843_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 753956930 Mar 30 15:06 SRR5442843_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 621876929 Mar 30 15:05 SRR5442842_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 721524548 Mar 30 15:05 SRR5442842_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 646503210 Mar 30 15:04 SRR5442841_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 751479460 Mar 30 15:04 SRR5442841_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 290723311 Mar 30 15:02 SRR5442840_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 326656283 Mar 30 15:02 SRR5442840_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 284951416 Mar 30 15:02 SRR5442839_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 317877401 Mar 30 15:02 SRR5442839_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 283798396 Mar 30 15:01 SRR5442838_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 319390374 Mar 30 15:01 SRR5442838_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 288987861 Mar 30 15:00 SRR5442837_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 324547000 Mar 30 15:00 SRR5442837_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732280.sum.gz output alignment file :SRX2732280.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 28935 ms) -FM-Index for g2a genome.... finished (elapsed: 57516 ms) -suffix array for c2t genome.... finished (elapsed: 65949 ms) -suffix array for g2a genome.... finished (elapsed: 73881 ms) -reference sequence.... finished (elapsed: 74186 ms) Index loading finished. File(s) loaded: SRR5442837_1.fastq.gz, SRR5442837_2.fastq.gz. File(s) loaded: SRR5442838_1.fastq.gz, SRR5442838_2.fastq.gz. File(s) loaded: SRR5442839_1.fastq.gz, SRR5442839_2.fastq.gz. File(s) loaded: SRR5442840_1.fastq.gz, SRR5442840_2.fastq.gz. File(s) loaded: SRR5442841_1.fastq.gz, SRR5442841_2.fastq.gz. File(s) loaded: SRR5442842_1.fastq.gz, SRR5442842_2.fastq.gz. File(s) loaded: SRR5442843_1.fastq.gz, SRR5442843_2.fastq.gz. File(s) loaded: SRR5442844_1.fastq.gz, SRR5442844_2.fastq.gz. Time elapsed:7799569 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732280’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7718358787 Mar 30 17:25 SRX2732280.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1449614284 Mar 30 17:25 SRX2732280.sum.gz SRX2732280.sum.gz was set to analysis list. Analyzing SRX2732280.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 6170 Mar 30 17:35 SRX2732280.mapsum.html Processing "SRX2732280.bisulalign.gz" (7718358787 bytes) ************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:41 SRX2732280.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 567327 Mar 30 17:46 SRX2732280.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732280.graph Output File (methyl) :SRX2732280.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732280.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732280.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 224707664 Mar 30 17:57 SRX2732280.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 40132985 Mar 30 17:57 SRX2732280.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 231910199 Mar 30 17:57 SRX2732280.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 808507 Mar 30 18:12 SRX2732280.hmr -rw-r--r-- 1 okishinya so-ddmku 10144 Mar 30 18:12 SRX2732280.pmd -rw-r--r-- 1 okishinya so-ddmku 9274762 Mar 30 18:12 SRX2732280.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 63483209 Mar 30 18:14 SRX2732280.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 48651529 Mar 30 18:13 SRX2732280.cpg.methyl.bw =-=-=num_reads 67855552 =-=-=mapping_rate_1 0.889 =-=-=mapping_rate_2 0.845 =-=-=methyl_rate_cpg_total 0.734 =-=-=methyl_rate_cpg_lambda 0.976 =-=-=low_methyl_region 33759 =-=-=partial_methyl_region 420 =-=-=high_methyl_region 386596 =-=-=coverage 1.90232 =-=-=end 210330_18:14:51 =-=-=duration 3.241