Job ID = 12237361 SRX = SRX2732279 Genome = rm6 Started at 210330_14:57:58 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 4760192 spots for SRR5442829/SRR5442829.sra Written 4760192 spots for SRR5442829/SRR5442829.sra Read 4670771 spots for SRR5442830/SRR5442830.sra Written 4670771 spots for SRR5442830/SRR5442830.sra Read 4722530 spots for SRR5442831/SRR5442831.sra Written 4722530 spots for SRR5442831/SRR5442831.sra Read 4827672 spots for SRR5442832/SRR5442832.sra Written 4827672 spots for SRR5442832/SRR5442832.sra Read 11981996 spots for SRR5442833/SRR5442833.sra Written 11981996 spots for SRR5442833/SRR5442833.sra Read 11459681 spots for SRR5442834/SRR5442834.sra Written 11459681 spots for SRR5442834/SRR5442834.sra Read 12386340 spots for SRR5442835/SRR5442835.sra Written 12386340 spots for SRR5442835/SRR5442835.sra Read 11844751 spots for SRR5442836/SRR5442836.sra Written 11844751 spots for SRR5442836/SRR5442836.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 610278078 Mar 30 15:05 SRR5442836_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 695270772 Mar 30 15:05 SRR5442836_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 641031902 Mar 30 15:04 SRR5442835_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 734374662 Mar 30 15:04 SRR5442835_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 601383342 Mar 30 15:02 SRR5442834_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 702023672 Mar 30 15:02 SRR5442834_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 628873908 Mar 30 15:01 SRR5442833_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 734396526 Mar 30 15:01 SRR5442833_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 240761068 Mar 30 15:00 SRR5442832_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 270387661 Mar 30 15:00 SRR5442832_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 235598744 Mar 30 14:59 SRR5442831_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 262516894 Mar 30 14:59 SRR5442831_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 233954096 Mar 30 14:59 SRR5442830_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 263152555 Mar 30 14:59 SRR5442830_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 238402247 Mar 30 14:58 SRR5442829_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 267453863 Mar 30 14:58 SRR5442829_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732279.sum.gz output alignment file :SRX2732279.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 28356 ms) -FM-Index for g2a genome.... finished (elapsed: 56905 ms) -suffix array for c2t genome.... finished (elapsed: 65444 ms) -suffix array for g2a genome.... finished (elapsed: 73341 ms) -reference sequence.... finished (elapsed: 73589 ms) Index loading finished. File(s) loaded: SRR5442829_1.fastq.gz, SRR5442829_2.fastq.gz. File(s) loaded: SRR5442830_1.fastq.gz, SRR5442830_2.fastq.gz. File(s) loaded: SRR5442831_1.fastq.gz, SRR5442831_2.fastq.gz. File(s) loaded: SRR5442832_1.fastq.gz, SRR5442832_2.fastq.gz. File(s) loaded: SRR5442833_1.fastq.gz, SRR5442833_2.fastq.gz. File(s) loaded: SRR5442834_1.fastq.gz, SRR5442834_2.fastq.gz. File(s) loaded: SRR5442835_1.fastq.gz, SRR5442835_2.fastq.gz. File(s) loaded: SRR5442836_1.fastq.gz, SRR5442836_2.fastq.gz. Time elapsed:7073370 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732279’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 5910056353 Mar 30 17:09 SRX2732279.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1421273413 Mar 30 17:09 SRX2732279.sum.gz SRX2732279.sum.gz was set to analysis list. Analyzing SRX2732279.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5111 Mar 30 17:18 SRX2732279.mapsum.html Processing "SRX2732279.bisulalign.gz" (5910056353 bytes) ***************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:23 SRX2732279.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 563397 Mar 30 17:29 SRX2732279.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732279.graph Output File (methyl) :SRX2732279.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732279.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732279.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 223897328 Mar 30 17:40 SRX2732279.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 38971016 Mar 30 17:40 SRX2732279.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 231805576 Mar 30 17:40 SRX2732279.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 707371 Mar 30 17:56 SRX2732279.hmr -rw-r--r-- 1 okishinya so-ddmku 11497 Mar 30 17:56 SRX2732279.pmd -rw-r--r-- 1 okishinya so-ddmku 8908487 Mar 30 17:56 SRX2732279.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 62224303 Mar 30 17:58 SRX2732279.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 48649082 Mar 30 17:57 SRX2732279.cpg.methyl.bw =-=-=num_reads 66653932 =-=-=mapping_rate_1 0.886 =-=-=mapping_rate_2 0.844 =-=-=methyl_rate_cpg_total 0.748 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 29535 =-=-=partial_methyl_region 474 =-=-=high_methyl_region 371413 =-=-=coverage 1.46637 =-=-=end 210330_17:58:48 =-=-=duration 3.013