Job ID = 12237339 SRX = SRX2732278 Genome = rm6 Started at 210330_14:54:14 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 8258213 spots for SRR5442821/SRR5442821.sra Written 8258213 spots for SRR5442821/SRR5442821.sra Read 8046193 spots for SRR5442822/SRR5442822.sra Written 8046193 spots for SRR5442822/SRR5442822.sra Read 8309395 spots for SRR5442823/SRR5442823.sra Written 8309395 spots for SRR5442823/SRR5442823.sra Read 8119867 spots for SRR5442824/SRR5442824.sra Written 8119867 spots for SRR5442824/SRR5442824.sra Read 5924173 spots for SRR5442825/SRR5442825.sra Written 5924173 spots for SRR5442825/SRR5442825.sra Read 5735954 spots for SRR5442826/SRR5442826.sra Written 5735954 spots for SRR5442826/SRR5442826.sra Read 5829884 spots for SRR5442827/SRR5442827.sra Written 5829884 spots for SRR5442827/SRR5442827.sra Read 5841331 spots for SRR5442828/SRR5442828.sra Written 5841331 spots for SRR5442828/SRR5442828.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 390187758 Mar 30 15:00 SRR5442828_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 408569654 Mar 30 15:00 SRR5442828_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 397970184 Mar 30 14:59 SRR5442827_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 408127626 Mar 30 14:59 SRR5442827_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 388924021 Mar 30 14:59 SRR5442826_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 405100529 Mar 30 14:59 SRR5442826_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 398633221 Mar 30 14:58 SRR5442825_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 416384970 Mar 30 14:58 SRR5442825_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 439743665 Mar 30 14:57 SRR5442824_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 488755563 Mar 30 14:57 SRR5442824_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 450260443 Mar 30 14:56 SRR5442823_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 504438851 Mar 30 14:56 SRR5442823_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 435821729 Mar 30 14:56 SRR5442822_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 485858234 Mar 30 14:56 SRR5442822_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 448707082 Mar 30 14:55 SRR5442821_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 501841328 Mar 30 14:55 SRR5442821_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732278.sum.gz output alignment file :SRX2732278.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 29617 ms) -FM-Index for g2a genome.... finished (elapsed: 59087 ms) -suffix array for c2t genome.... finished (elapsed: 68488 ms) -suffix array for g2a genome.... finished (elapsed: 76953 ms) -reference sequence.... finished (elapsed: 77298 ms) Index loading finished. File(s) loaded: SRR5442821_1.fastq.gz, SRR5442821_2.fastq.gz. File(s) loaded: SRR5442822_1.fastq.gz, SRR5442822_2.fastq.gz. File(s) loaded: SRR5442823_1.fastq.gz, SRR5442823_2.fastq.gz. File(s) loaded: SRR5442824_1.fastq.gz, SRR5442824_2.fastq.gz. File(s) loaded: SRR5442825_1.fastq.gz, SRR5442825_2.fastq.gz. File(s) loaded: SRR5442826_1.fastq.gz, SRR5442826_2.fastq.gz. File(s) loaded: SRR5442827_1.fastq.gz, SRR5442827_2.fastq.gz. File(s) loaded: SRR5442828_1.fastq.gz, SRR5442828_2.fastq.gz. Time elapsed:6307808 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732278’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 5815330845 Mar 30 16:51 SRX2732278.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1186559288 Mar 30 16:51 SRX2732278.sum.gz SRX2732278.sum.gz was set to analysis list. Analyzing SRX2732278.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5441 Mar 30 16:59 SRX2732278.mapsum.html Processing "SRX2732278.bisulalign.gz" (5815330845 bytes) **: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:05 SRX2732278.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 563229 Mar 30 17:10 SRX2732278.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732278.graph Output File (methyl) :SRX2732278.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732278.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732278.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 222966237 Mar 30 17:21 SRX2732278.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 24286142 Mar 30 17:21 SRX2732278.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 227675347 Mar 30 17:21 SRX2732278.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 554732 Mar 30 17:31 SRX2732278.hmr -rw-r--r-- 1 okishinya so-ddmku 6898 Mar 30 17:31 SRX2732278.pmd -rw-r--r-- 1 okishinya so-ddmku 5767753 Mar 30 17:31 SRX2732278.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 42861406 Mar 30 17:33 SRX2732278.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 32635751 Mar 30 17:32 SRX2732278.cpg.methyl.bw =-=-=num_reads 56065000 =-=-=mapping_rate_1 0.869 =-=-=mapping_rate_2 0.854 =-=-=methyl_rate_cpg_total 0.727 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 23146 =-=-=partial_methyl_region 288 =-=-=high_methyl_region 240207 =-=-=coverage 1.57815 =-=-=end 210330_17:33:24 =-=-=duration 2.652