Job ID = 12237347 SRX = SRX2732277 Genome = rm6 Started at 210330_14:55:25 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 8628121 spots for SRR5442813/SRR5442813.sra Written 8628121 spots for SRR5442813/SRR5442813.sra Read 8463435 spots for SRR5442814/SRR5442814.sra Written 8463435 spots for SRR5442814/SRR5442814.sra Read 8618085 spots for SRR5442815/SRR5442815.sra Written 8618085 spots for SRR5442815/SRR5442815.sra Read 8475949 spots for SRR5442816/SRR5442816.sra Written 8475949 spots for SRR5442816/SRR5442816.sra Read 6288784 spots for SRR5442817/SRR5442817.sra Written 6288784 spots for SRR5442817/SRR5442817.sra Read 6085418 spots for SRR5442818/SRR5442818.sra Written 6085418 spots for SRR5442818/SRR5442818.sra Read 6157109 spots for SRR5442819/SRR5442819.sra Written 6157109 spots for SRR5442819/SRR5442819.sra Read 6163553 spots for SRR5442820/SRR5442820.sra Written 6163553 spots for SRR5442820/SRR5442820.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 421334052 Mar 30 15:02 SRR5442820_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 450123319 Mar 30 15:02 SRR5442820_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 429198671 Mar 30 15:01 SRR5442819_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 449726165 Mar 30 15:01 SRR5442819_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 422485887 Mar 30 15:00 SRR5442818_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 448599071 Mar 30 15:00 SRR5442818_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 433207501 Mar 30 15:00 SRR5442817_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 462216980 Mar 30 15:00 SRR5442817_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 472267320 Mar 30 14:59 SRR5442816_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 541074784 Mar 30 14:59 SRR5442816_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 480466692 Mar 30 14:58 SRR5442815_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 555881972 Mar 30 14:58 SRR5442815_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 471725965 Mar 30 14:57 SRR5442814_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 543239845 Mar 30 14:57 SRR5442814_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 482404237 Mar 30 14:56 SRR5442813_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 559430692 Mar 30 14:56 SRR5442813_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732277.sum.gz output alignment file :SRX2732277.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 29182 ms) -FM-Index for g2a genome.... finished (elapsed: 57741 ms) -suffix array for c2t genome.... finished (elapsed: 66435 ms) -suffix array for g2a genome.... finished (elapsed: 74726 ms) -reference sequence.... finished (elapsed: 75023 ms) Index loading finished. File(s) loaded: SRR5442813_1.fastq.gz, SRR5442813_2.fastq.gz. File(s) loaded: SRR5442814_1.fastq.gz, SRR5442814_2.fastq.gz. File(s) loaded: SRR5442815_1.fastq.gz, SRR5442815_2.fastq.gz. File(s) loaded: SRR5442816_1.fastq.gz, SRR5442816_2.fastq.gz. File(s) loaded: SRR5442817_1.fastq.gz, SRR5442817_2.fastq.gz. File(s) loaded: SRR5442818_1.fastq.gz, SRR5442818_2.fastq.gz. File(s) loaded: SRR5442819_1.fastq.gz, SRR5442819_2.fastq.gz. File(s) loaded: SRR5442820_1.fastq.gz, SRR5442820_2.fastq.gz. Time elapsed:6489017 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732277’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 6863942147 Mar 30 16:57 SRX2732277.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1257665993 Mar 30 16:57 SRX2732277.sum.gz SRX2732277.sum.gz was set to analysis list. Analyzing SRX2732277.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5021 Mar 30 17:06 SRX2732277.mapsum.html Processing "SRX2732277.bisulalign.gz" (6863942147 bytes) **********: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:11 SRX2732277.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 565421 Mar 30 17:17 SRX2732277.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732277.graph Output File (methyl) :SRX2732277.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732277.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732277.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 224379077 Mar 30 17:28 SRX2732277.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 48689669 Mar 30 17:28 SRX2732277.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 233686861 Mar 30 17:28 SRX2732277.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 735035 Mar 30 17:48 SRX2732277.hmr -rw-r--r-- 1 okishinya so-ddmku 14580 Mar 30 17:48 SRX2732277.pmd -rw-r--r-- 1 okishinya so-ddmku 10722019 Mar 30 17:48 SRX2732277.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 74070368 Mar 30 17:50 SRX2732277.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 57030965 Mar 30 17:49 SRX2732277.cpg.methyl.bw =-=-=num_reads 58880452 =-=-=mapping_rate_1 0.869 =-=-=mapping_rate_2 0.849 =-=-=methyl_rate_cpg_total 0.745 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 30683 =-=-=partial_methyl_region 606 =-=-=high_methyl_region 446821 =-=-=coverage 1.61898 =-=-=end 210330_17:50:53 =-=-=duration 2.924