Job ID = 12237362 SRX = SRX2732276 Genome = rm6 Started at 210330_14:57:58 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 9614382 spots for SRR5442805/SRR5442805.sra Written 9614382 spots for SRR5442805/SRR5442805.sra Read 9424817 spots for SRR5442806/SRR5442806.sra Written 9424817 spots for SRR5442806/SRR5442806.sra Read 9658870 spots for SRR5442807/SRR5442807.sra Written 9658870 spots for SRR5442807/SRR5442807.sra Read 9487886 spots for SRR5442808/SRR5442808.sra Written 9487886 spots for SRR5442808/SRR5442808.sra Read 7326766 spots for SRR5442809/SRR5442809.sra Written 7326766 spots for SRR5442809/SRR5442809.sra Read 7132606 spots for SRR5442810/SRR5442810.sra Written 7132606 spots for SRR5442810/SRR5442810.sra Read 7218943 spots for SRR5442811/SRR5442811.sra Written 7218943 spots for SRR5442811/SRR5442811.sra Read 7241839 spots for SRR5442812/SRR5442812.sra Written 7241839 spots for SRR5442812/SRR5442812.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 490773665 Mar 30 15:05 SRR5442812_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 517403973 Mar 30 15:05 SRR5442812_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 499185741 Mar 30 15:04 SRR5442811_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 515044801 Mar 30 15:04 SRR5442811_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 490542603 Mar 30 15:03 SRR5442810_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 514385720 Mar 30 15:03 SRR5442810_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 499933124 Mar 30 15:03 SRR5442809_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 524723765 Mar 30 15:03 SRR5442809_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 521667200 Mar 30 15:02 SRR5442808_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 586224637 Mar 30 15:02 SRR5442808_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 531283271 Mar 30 15:01 SRR5442807_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 601232615 Mar 30 15:01 SRR5442807_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 518404442 Mar 30 15:00 SRR5442806_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 583837311 Mar 30 15:00 SRR5442806_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 530319464 Mar 30 14:59 SRR5442805_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 598957553 Mar 30 14:59 SRR5442805_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732276.sum.gz output alignment file :SRX2732276.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 28088 ms) -FM-Index for g2a genome.... finished (elapsed: 56274 ms) -suffix array for c2t genome.... finished (elapsed: 64762 ms) -suffix array for g2a genome.... finished (elapsed: 72634 ms) -reference sequence.... finished (elapsed: 72878 ms) Index loading finished. File(s) loaded: SRR5442805_1.fastq.gz, SRR5442805_2.fastq.gz. File(s) loaded: SRR5442806_1.fastq.gz, SRR5442806_2.fastq.gz. File(s) loaded: SRR5442807_1.fastq.gz, SRR5442807_2.fastq.gz. File(s) loaded: SRR5442808_1.fastq.gz, SRR5442808_2.fastq.gz. File(s) loaded: SRR5442809_1.fastq.gz, SRR5442809_2.fastq.gz. File(s) loaded: SRR5442810_1.fastq.gz, SRR5442810_2.fastq.gz. File(s) loaded: SRR5442811_1.fastq.gz, SRR5442811_2.fastq.gz. File(s) loaded: SRR5442812_1.fastq.gz, SRR5442812_2.fastq.gz. Time elapsed:7536827 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732276’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7835570084 Mar 30 17:18 SRX2732276.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1436226730 Mar 30 17:18 SRX2732276.sum.gz SRX2732276.sum.gz was set to analysis list. Analyzing SRX2732276.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5502 Mar 30 17:29 SRX2732276.mapsum.html Processing "SRX2732276.bisulalign.gz" (7835570084 bytes) *************************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:34 SRX2732276.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 567418 Mar 30 17:40 SRX2732276.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732276.graph Output File (methyl) :SRX2732276.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732276.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732276.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225091858 Mar 30 17:51 SRX2732276.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 54653058 Mar 30 17:51 SRX2732276.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 235261986 Mar 30 17:51 SRX2732276.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 720719 Mar 30 18:13 SRX2732276.hmr -rw-r--r-- 1 okishinya so-ddmku 14741 Mar 30 18:13 SRX2732276.pmd -rw-r--r-- 1 okishinya so-ddmku 11391215 Mar 30 18:13 SRX2732276.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 80942763 Mar 30 18:16 SRX2732276.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 62588881 Mar 30 18:14 SRX2732276.cpg.methyl.bw =-=-=num_reads 67106108 =-=-=mapping_rate_1 0.871 =-=-=mapping_rate_2 0.85 =-=-=methyl_rate_cpg_total 0.743 =-=-=methyl_rate_cpg_lambda 0.976 =-=-=low_methyl_region 30091 =-=-=partial_methyl_region 611 =-=-=high_methyl_region 474688 =-=-=coverage 1.85213 =-=-=end 210330_18:16:17 =-=-=duration 3.305