Job ID = 12237355 SRX = SRX2732275 Genome = rm6 Started at 210330_14:56:35 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 9298813 spots for SRR5442797/SRR5442797.sra Written 9298813 spots for SRR5442797/SRR5442797.sra Read 9068549 spots for SRR5442798/SRR5442798.sra Written 9068549 spots for SRR5442798/SRR5442798.sra Read 9366182 spots for SRR5442799/SRR5442799.sra Written 9366182 spots for SRR5442799/SRR5442799.sra Read 9174132 spots for SRR5442800/SRR5442800.sra Written 9174132 spots for SRR5442800/SRR5442800.sra Read 6816130 spots for SRR5442801/SRR5442801.sra Written 6816130 spots for SRR5442801/SRR5442801.sra Read 6603706 spots for SRR5442802/SRR5442802.sra Written 6603706 spots for SRR5442802/SRR5442802.sra Read 6714606 spots for SRR5442803/SRR5442803.sra Written 6714606 spots for SRR5442803/SRR5442803.sra Read 6730705 spots for SRR5442804/SRR5442804.sra Written 6730705 spots for SRR5442804/SRR5442804.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 444382904 Mar 30 15:03 SRR5442804_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 464208459 Mar 30 15:03 SRR5442804_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 453655600 Mar 30 15:02 SRR5442803_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 463714330 Mar 30 15:02 SRR5442803_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 442914998 Mar 30 15:02 SRR5442802_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 460034796 Mar 30 15:02 SRR5442802_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 453513783 Mar 30 15:01 SRR5442801_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 472601849 Mar 30 15:01 SRR5442801_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 489066909 Mar 30 15:00 SRR5442800_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 542694857 Mar 30 15:00 SRR5442800_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 499852830 Mar 30 14:59 SRR5442799_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 559436370 Mar 30 14:59 SRR5442799_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 483791525 Mar 30 14:58 SRR5442798_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 538225885 Mar 30 14:58 SRR5442798_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 497589028 Mar 30 14:57 SRR5442797_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 555945649 Mar 30 14:57 SRR5442797_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732275.sum.gz output alignment file :SRX2732275.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 28727 ms) -FM-Index for g2a genome.... finished (elapsed: 57723 ms) -suffix array for c2t genome.... finished (elapsed: 66561 ms) -suffix array for g2a genome.... finished (elapsed: 74626 ms) -reference sequence.... finished (elapsed: 74936 ms) Index loading finished. File(s) loaded: SRR5442797_1.fastq.gz, SRR5442797_2.fastq.gz. File(s) loaded: SRR5442798_1.fastq.gz, SRR5442798_2.fastq.gz. File(s) loaded: SRR5442799_1.fastq.gz, SRR5442799_2.fastq.gz. File(s) loaded: SRR5442800_1.fastq.gz, SRR5442800_2.fastq.gz. File(s) loaded: SRR5442801_1.fastq.gz, SRR5442801_2.fastq.gz. File(s) loaded: SRR5442802_1.fastq.gz, SRR5442802_2.fastq.gz. File(s) loaded: SRR5442803_1.fastq.gz, SRR5442803_2.fastq.gz. File(s) loaded: SRR5442804_1.fastq.gz, SRR5442804_2.fastq.gz. Time elapsed:6980528 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732275’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 6343579372 Mar 30 17:07 SRX2732275.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1363653841 Mar 30 17:07 SRX2732275.sum.gz SRX2732275.sum.gz was set to analysis list. Analyzing SRX2732275.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4930 Mar 30 17:15 SRX2732275.mapsum.html Processing "SRX2732275.bisulalign.gz" (6343579372 bytes) **********: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:20 SRX2732275.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 565285 Mar 30 17:26 SRX2732275.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732275.graph Output File (methyl) :SRX2732275.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732275.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732275.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 223758705 Mar 30 17:37 SRX2732275.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 29978186 Mar 30 17:37 SRX2732275.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 229473286 Mar 30 17:37 SRX2732275.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 609493 Mar 30 17:48 SRX2732275.hmr -rw-r--r-- 1 okishinya so-ddmku 7570 Mar 30 17:48 SRX2732275.pmd -rw-r--r-- 1 okishinya so-ddmku 7023932 Mar 30 17:48 SRX2732275.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 50400613 Mar 30 17:50 SRX2732275.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 39023040 Mar 30 17:49 SRX2732275.cpg.methyl.bw =-=-=num_reads 63772821 =-=-=mapping_rate_1 0.872 =-=-=mapping_rate_2 0.856 =-=-=methyl_rate_cpg_total 0.743 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 25439 =-=-=partial_methyl_region 313 =-=-=high_methyl_region 292525 =-=-=coverage 1.67198 =-=-=end 210330_17:50:56 =-=-=duration 2.905