Job ID = 12237358 SRX = SRX2732274 Genome = rm6 Started at 210330_14:57:28 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 8007966 spots for SRR5442789/SRR5442789.sra Written 8007966 spots for SRR5442789/SRR5442789.sra Read 7789744 spots for SRR5442790/SRR5442790.sra Written 7789744 spots for SRR5442790/SRR5442790.sra Read 8255748 spots for SRR5442791/SRR5442791.sra Written 8255748 spots for SRR5442791/SRR5442791.sra Read 7966948 spots for SRR5442792/SRR5442792.sra Written 7966948 spots for SRR5442792/SRR5442792.sra Read 8324105 spots for SRR5442793/SRR5442793.sra Written 8324105 spots for SRR5442793/SRR5442793.sra Read 7977963 spots for SRR5442794/SRR5442794.sra Written 7977963 spots for SRR5442794/SRR5442794.sra Read 8466835 spots for SRR5442795/SRR5442795.sra Written 8466835 spots for SRR5442795/SRR5442795.sra Read 8218654 spots for SRR5442796/SRR5442796.sra Written 8218654 spots for SRR5442796/SRR5442796.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 452726235 Mar 30 15:04 SRR5442796_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 527833912 Mar 30 15:04 SRR5442796_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 466851529 Mar 30 15:03 SRR5442795_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 548583350 Mar 30 15:03 SRR5442795_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 446433687 Mar 30 15:02 SRR5442794_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 525443714 Mar 30 15:02 SRR5442794_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 463177458 Mar 30 15:01 SRR5442793_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 549316859 Mar 30 15:01 SRR5442793_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 423478755 Mar 30 15:01 SRR5442792_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 460088413 Mar 30 15:01 SRR5442792_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 442312939 Mar 30 15:00 SRR5442791_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 479157986 Mar 30 15:00 SRR5442791_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 421172573 Mar 30 14:59 SRR5442790_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 455805355 Mar 30 14:59 SRR5442790_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 432444188 Mar 30 14:58 SRR5442789_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 466895527 Mar 30 14:58 SRR5442789_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732274.sum.gz output alignment file :SRX2732274.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 32089 ms) -FM-Index for g2a genome.... finished (elapsed: 63630 ms) -suffix array for c2t genome.... finished (elapsed: 73334 ms) -suffix array for g2a genome.... finished (elapsed: 82359 ms) -reference sequence.... finished (elapsed: 82710 ms) Index loading finished. File(s) loaded: SRR5442789_1.fastq.gz, SRR5442789_2.fastq.gz. File(s) loaded: SRR5442790_1.fastq.gz, SRR5442790_2.fastq.gz. File(s) loaded: SRR5442791_1.fastq.gz, SRR5442791_2.fastq.gz. File(s) loaded: SRR5442792_1.fastq.gz, SRR5442792_2.fastq.gz. File(s) loaded: SRR5442793_1.fastq.gz, SRR5442793_2.fastq.gz. File(s) loaded: SRR5442794_1.fastq.gz, SRR5442794_2.fastq.gz. File(s) loaded: SRR5442795_1.fastq.gz, SRR5442795_2.fastq.gz. File(s) loaded: SRR5442796_1.fastq.gz, SRR5442796_2.fastq.gz. Time elapsed:7226737 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732274’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7790510696 Mar 30 17:12 SRX2732274.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1406165481 Mar 30 17:12 SRX2732274.sum.gz SRX2732274.sum.gz was set to analysis list. Analyzing SRX2732274.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4952 Mar 30 17:23 SRX2732274.mapsum.html Processing "SRX2732274.bisulalign.gz" (7790510696 bytes) *****************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:28 SRX2732274.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559596 Mar 30 17:34 SRX2732274.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732274.graph Output File (methyl) :SRX2732274.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732274.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732274.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225703835 Mar 30 17:45 SRX2732274.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 95768682 Mar 30 17:45 SRX2732274.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 245110892 Mar 30 17:45 SRX2732274.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 866957 Mar 30 18:21 SRX2732274.hmr -rw-r--r-- 1 okishinya so-ddmku 30544 Mar 30 18:21 SRX2732274.pmd -rw-r--r-- 1 okishinya so-ddmku 11049467 Mar 30 18:21 SRX2732274.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 162207601 Mar 30 18:25 SRX2732274.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 134644488 Mar 30 18:23 SRX2732274.cpg.methyl.bw =-=-=num_reads 65007962 =-=-=mapping_rate_1 0.9 =-=-=mapping_rate_2 0.863 =-=-=methyl_rate_cpg_total 0.74 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 36190 =-=-=partial_methyl_region 1276 =-=-=high_methyl_region 459835 =-=-=coverage 1.78224 =-=-=end 210330_18:25:42 =-=-=duration 3.470