Job ID = 12237373 SRX = SRX2732273 Genome = rm6 Started at 210330_15:00:50 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 10070866 spots for SRR5442781/SRR5442781.sra Written 10070866 spots for SRR5442781/SRR5442781.sra Read 9791300 spots for SRR5442782/SRR5442782.sra Written 9791300 spots for SRR5442782/SRR5442782.sra Read 10107061 spots for SRR5442783/SRR5442783.sra Written 10107061 spots for SRR5442783/SRR5442783.sra Read 9863731 spots for SRR5442784/SRR5442784.sra Written 9863731 spots for SRR5442784/SRR5442784.sra Read 7366799 spots for SRR5442785/SRR5442785.sra Written 7366799 spots for SRR5442785/SRR5442785.sra Read 7117713 spots for SRR5442786/SRR5442786.sra Written 7117713 spots for SRR5442786/SRR5442786.sra Read 7272924 spots for SRR5442787/SRR5442787.sra Written 7272924 spots for SRR5442787/SRR5442787.sra Read 7236474 spots for SRR5442788/SRR5442788.sra Written 7236474 spots for SRR5442788/SRR5442788.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 491655081 Mar 30 15:09 SRR5442788_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 515703944 Mar 30 15:09 SRR5442788_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 504425255 Mar 30 15:08 SRR5442787_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 518851997 Mar 30 15:08 SRR5442787_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 490677324 Mar 30 15:07 SRR5442786_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 511843593 Mar 30 15:07 SRR5442786_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 504065267 Mar 30 15:06 SRR5442785_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 527397207 Mar 30 15:06 SRR5442785_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 541272039 Mar 30 15:05 SRR5442784_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 604718378 Mar 30 15:05 SRR5442784_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 555115343 Mar 30 15:04 SRR5442783_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 625754503 Mar 30 15:04 SRR5442783_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 537632519 Mar 30 15:03 SRR5442782_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 601771965 Mar 30 15:03 SRR5442782_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 554693904 Mar 30 15:02 SRR5442781_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 623809472 Mar 30 15:02 SRR5442781_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732273.sum.gz output alignment file :SRX2732273.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 30293 ms) -FM-Index for g2a genome.... finished (elapsed: 59815 ms) -suffix array for c2t genome.... finished (elapsed: 100644 ms) -suffix array for g2a genome.... finished (elapsed: 141056 ms) -reference sequence.... finished (elapsed: 145700 ms) Index loading finished. File(s) loaded: SRR5442781_1.fastq.gz, SRR5442781_2.fastq.gz. File(s) loaded: SRR5442782_1.fastq.gz, SRR5442782_2.fastq.gz. File(s) loaded: SRR5442783_1.fastq.gz, SRR5442783_2.fastq.gz. File(s) loaded: SRR5442784_1.fastq.gz, SRR5442784_2.fastq.gz. File(s) loaded: SRR5442785_1.fastq.gz, SRR5442785_2.fastq.gz. File(s) loaded: SRR5442786_1.fastq.gz, SRR5442786_2.fastq.gz. File(s) loaded: SRR5442787_1.fastq.gz, SRR5442787_2.fastq.gz. File(s) loaded: SRR5442788_1.fastq.gz, SRR5442788_2.fastq.gz. Time elapsed:8375363 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732273’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7972176169 Mar 30 17:37 SRX2732273.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1475299029 Mar 30 17:37 SRX2732273.sum.gz SRX2732273.sum.gz was set to analysis list. Analyzing SRX2732273.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5523 Mar 30 17:49 SRX2732273.mapsum.html Processing "SRX2732273.bisulalign.gz" (7972176169 bytes) ********************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:55 SRX2732273.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 567397 Mar 30 18:01 SRX2732273.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732273.graph Output File (methyl) :SRX2732273.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732273.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732273.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225431007 Mar 30 18:13 SRX2732273.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 66671700 Mar 30 18:13 SRX2732273.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 238107993 Mar 30 18:13 SRX2732273.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 680180 Mar 30 18:42 SRX2732273.hmr -rw-r--r-- 1 okishinya so-ddmku 16909 Mar 30 18:42 SRX2732273.pmd -rw-r--r-- 1 okishinya so-ddmku 11983459 Mar 30 18:42 SRX2732273.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 125960608 Mar 30 18:45 SRX2732273.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 74222926 Mar 30 18:43 SRX2732273.cpg.methyl.bw =-=-=num_reads 68826867 =-=-=mapping_rate_1 0.874 =-=-=mapping_rate_2 0.855 =-=-=methyl_rate_cpg_total 0.745 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 28397 =-=-=partial_methyl_region 704 =-=-=high_methyl_region 499200 =-=-=coverage 1.87739 =-=-=end 210330_18:45:23 =-=-=duration 3.742