Job ID = 12237374 SRX = SRX2732272 Genome = rm6 Started at 210330_15:00:50 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 9758200 spots for SRR5442773/SRR5442773.sra Written 9758200 spots for SRR5442773/SRR5442773.sra Read 9520718 spots for SRR5442774/SRR5442774.sra Written 9520718 spots for SRR5442774/SRR5442774.sra Read 9825873 spots for SRR5442775/SRR5442775.sra Written 9825873 spots for SRR5442775/SRR5442775.sra Read 9611833 spots for SRR5442776/SRR5442776.sra Written 9611833 spots for SRR5442776/SRR5442776.sra Read 7665249 spots for SRR5442777/SRR5442777.sra Written 7665249 spots for SRR5442777/SRR5442777.sra Read 7439566 spots for SRR5442778/SRR5442778.sra Written 7439566 spots for SRR5442778/SRR5442778.sra Read 7566429 spots for SRR5442779/SRR5442779.sra Written 7566429 spots for SRR5442779/SRR5442779.sra Read 7580652 spots for SRR5442780/SRR5442780.sra Written 7580652 spots for SRR5442780/SRR5442780.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 505560481 Mar 30 15:09 SRR5442780_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 529730704 Mar 30 15:09 SRR5442780_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 515867353 Mar 30 15:08 SRR5442779_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 529546584 Mar 30 15:08 SRR5442779_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 503662527 Mar 30 15:07 SRR5442778_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 524973331 Mar 30 15:07 SRR5442778_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 515029112 Mar 30 15:06 SRR5442777_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 538459999 Mar 30 15:06 SRR5442777_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 518610579 Mar 30 15:05 SRR5442776_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 580139335 Mar 30 15:05 SRR5442776_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 530566803 Mar 30 15:04 SRR5442775_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 598270621 Mar 30 15:04 SRR5442775_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 514297575 Mar 30 15:03 SRR5442774_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 576681011 Mar 30 15:03 SRR5442774_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 528387780 Mar 30 15:02 SRR5442773_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 594462515 Mar 30 15:02 SRR5442773_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732272.sum.gz output alignment file :SRX2732272.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 32737 ms) -FM-Index for g2a genome.... finished (elapsed: 64978 ms) -suffix array for c2t genome.... finished (elapsed: 105278 ms) -suffix array for g2a genome.... finished (elapsed: 145696 ms) -reference sequence.... finished (elapsed: 150321 ms) Index loading finished. File(s) loaded: SRR5442773_1.fastq.gz, SRR5442773_2.fastq.gz. File(s) loaded: SRR5442774_1.fastq.gz, SRR5442774_2.fastq.gz. File(s) loaded: SRR5442775_1.fastq.gz, SRR5442775_2.fastq.gz. File(s) loaded: SRR5442776_1.fastq.gz, SRR5442776_2.fastq.gz. File(s) loaded: SRR5442777_1.fastq.gz, SRR5442777_2.fastq.gz. File(s) loaded: SRR5442778_1.fastq.gz, SRR5442778_2.fastq.gz. File(s) loaded: SRR5442779_1.fastq.gz, SRR5442779_2.fastq.gz. File(s) loaded: SRR5442780_1.fastq.gz, SRR5442780_2.fastq.gz. Time elapsed:8022831 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732272’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7297866580 Mar 30 17:31 SRX2732272.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1479496956 Mar 30 17:31 SRX2732272.sum.gz SRX2732272.sum.gz was set to analysis list. Analyzing SRX2732272.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4950 Mar 30 17:42 SRX2732272.mapsum.html Processing "SRX2732272.bisulalign.gz" (7297866580 bytes) ********: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:48 SRX2732272.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 565425 Mar 30 17:54 SRX2732272.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732272.graph Output File (methyl) :SRX2732272.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732272.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732272.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 224987888 Mar 30 18:06 SRX2732272.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 52102481 Mar 30 18:06 SRX2732272.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 234934888 Mar 30 18:06 SRX2732272.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 765329 Mar 30 18:29 SRX2732272.hmr -rw-r--r-- 1 okishinya so-ddmku 14615 Mar 30 18:29 SRX2732272.pmd -rw-r--r-- 1 okishinya so-ddmku 10951367 Mar 30 18:29 SRX2732272.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 77575847 Mar 30 18:32 SRX2732272.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 60416500 Mar 30 18:30 SRX2732272.cpg.methyl.bw =-=-=num_reads 68968520 =-=-=mapping_rate_1 0.876 =-=-=mapping_rate_2 0.856 =-=-=methyl_rate_cpg_total 0.742 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 31951 =-=-=partial_methyl_region 605 =-=-=high_methyl_region 456275 =-=-=coverage 1.79592 =-=-=end 210330_18:32:13 =-=-=duration 3.523