Job ID = 12237390 SRX = SRX2732271 Genome = rm6 Started at 210330_15:44:00 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 8138304 spots for SRR5442765/SRR5442765.sra Written 8138304 spots for SRR5442765/SRR5442765.sra Read 7908202 spots for SRR5442766/SRR5442766.sra Written 7908202 spots for SRR5442766/SRR5442766.sra Read 8500548 spots for SRR5442767/SRR5442767.sra Written 8500548 spots for SRR5442767/SRR5442767.sra Read 8205252 spots for SRR5442768/SRR5442768.sra Written 8205252 spots for SRR5442768/SRR5442768.sra Read 11336846 spots for SRR5442769/SRR5442769.sra Written 11336846 spots for SRR5442769/SRR5442769.sra Read 10836009 spots for SRR5442770/SRR5442770.sra Written 10836009 spots for SRR5442770/SRR5442770.sra Read 11417412 spots for SRR5442771/SRR5442771.sra Written 11417412 spots for SRR5442771/SRR5442771.sra Read 10844126 spots for SRR5442772/SRR5442772.sra Written 10844126 spots for SRR5442772/SRR5442772.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 690859788 Mar 30 15:54 SRR5442772_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 753979450 Mar 30 15:54 SRR5442772_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 722963912 Mar 30 15:53 SRR5442771_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 796835745 Mar 30 15:53 SRR5442771_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 700780553 Mar 30 15:51 SRR5442770_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 760806494 Mar 30 15:51 SRR5442770_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 727254386 Mar 30 15:50 SRR5442769_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 794672635 Mar 30 15:50 SRR5442769_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 555877334 Mar 30 15:48 SRR5442768_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 598236530 Mar 30 15:48 SRR5442768_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 575855826 Mar 30 15:47 SRR5442767_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 621767684 Mar 30 15:47 SRR5442767_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 549259489 Mar 30 15:46 SRR5442766_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 583580676 Mar 30 15:46 SRR5442766_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 562198962 Mar 30 15:45 SRR5442765_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 601623869 Mar 30 15:45 SRR5442765_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732271.sum.gz output alignment file :SRX2732271.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 52995 ms) -FM-Index for g2a genome.... finished (elapsed: 108696 ms) -suffix array for c2t genome.... finished (elapsed: 127303 ms) -suffix array for g2a genome.... finished (elapsed: 145352 ms) -reference sequence.... finished (elapsed: 146754 ms) Index loading finished. File(s) loaded: SRR5442765_1.fastq.gz, SRR5442765_2.fastq.gz. File(s) loaded: SRR5442766_1.fastq.gz, SRR5442766_2.fastq.gz. File(s) loaded: SRR5442767_1.fastq.gz, SRR5442767_2.fastq.gz. File(s) loaded: SRR5442768_1.fastq.gz, SRR5442768_2.fastq.gz. File(s) loaded: SRR5442769_1.fastq.gz, SRR5442769_2.fastq.gz. File(s) loaded: SRR5442770_1.fastq.gz, SRR5442770_2.fastq.gz. File(s) loaded: SRR5442771_1.fastq.gz, SRR5442771_2.fastq.gz. File(s) loaded: SRR5442772_1.fastq.gz, SRR5442772_2.fastq.gz. Time elapsed:6560192 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732271’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 9269093687 Mar 30 17:55 SRX2732271.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1649089640 Mar 30 17:55 SRX2732271.sum.gz SRX2732271.sum.gz was set to analysis list. Analyzing SRX2732271.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5186 Mar 30 18:11 SRX2732271.mapsum.html Processing "SRX2732271.bisulalign.gz" (9269093687 bytes) ***: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:17 SRX2732271.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 569375 Mar 30 18:24 SRX2732271.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732271.graph Output File (methyl) :SRX2732271.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732271.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732271.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 226373242 Mar 30 18:38 SRX2732271.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 78288711 Mar 30 18:38 SRX2732271.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 241033752 Mar 30 18:38 SRX2732271.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 793419 Mar 30 19:11 SRX2732271.hmr -rw-r--r-- 1 okishinya so-ddmku 24391 Mar 30 19:11 SRX2732271.pmd -rw-r--r-- 1 okishinya so-ddmku 11986357 Mar 30 19:11 SRX2732271.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 141843783 Mar 30 19:14 SRX2732271.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 85032711 Mar 30 19:12 SRX2732271.cpg.methyl.bw =-=-=num_reads 77186696 =-=-=mapping_rate_1 0.874 =-=-=mapping_rate_2 0.833 =-=-=methyl_rate_cpg_total 0.744 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 33112 =-=-=partial_methyl_region 1012 =-=-=high_methyl_region 499194 =-=-=coverage 2.09581 =-=-=end 210330_19:14:53 =-=-=duration 3.514