Job ID = 12237383 SRX = SRX2732270 Genome = rm6 Started at 210330_15:40:31 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7990309 spots for SRR5442757/SRR5442757.sra Written 7990309 spots for SRR5442757/SRR5442757.sra Read 7770530 spots for SRR5442758/SRR5442758.sra Written 7770530 spots for SRR5442758/SRR5442758.sra Read 8348798 spots for SRR5442759/SRR5442759.sra Written 8348798 spots for SRR5442759/SRR5442759.sra Read 8054112 spots for SRR5442760/SRR5442760.sra Written 8054112 spots for SRR5442760/SRR5442760.sra Read 10500285 spots for SRR5442761/SRR5442761.sra Written 10500285 spots for SRR5442761/SRR5442761.sra Read 10018891 spots for SRR5442762/SRR5442762.sra Written 10018891 spots for SRR5442762/SRR5442762.sra Read 10562764 spots for SRR5442763/SRR5442763.sra Written 10562764 spots for SRR5442763/SRR5442763.sra Read 10043127 spots for SRR5442764/SRR5442764.sra Written 10043127 spots for SRR5442764/SRR5442764.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 641074976 Mar 30 15:50 SRR5442764_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 719993431 Mar 30 15:50 SRR5442764_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 670284551 Mar 30 15:49 SRR5442763_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 761528056 Mar 30 15:49 SRR5442763_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 649823126 Mar 30 15:47 SRR5442762_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 722539188 Mar 30 15:47 SRR5442762_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 675428214 Mar 30 15:46 SRR5442761_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 759404828 Mar 30 15:46 SRR5442761_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 546003604 Mar 30 15:44 SRR5442760_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 603276636 Mar 30 15:44 SRR5442760_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 565922100 Mar 30 15:43 SRR5442759_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 630036037 Mar 30 15:43 SRR5442759_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 540176804 Mar 30 15:42 SRR5442758_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 588249266 Mar 30 15:42 SRR5442758_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 552558166 Mar 30 15:41 SRR5442757_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 605430502 Mar 30 15:41 SRR5442757_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732270.sum.gz output alignment file :SRX2732270.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 52569 ms) -FM-Index for g2a genome.... finished (elapsed: 107106 ms) -suffix array for c2t genome.... finished (elapsed: 117231 ms) -suffix array for g2a genome.... finished (elapsed: 127006 ms) -reference sequence.... finished (elapsed: 127388 ms) Index loading finished. File(s) loaded: SRR5442757_1.fastq.gz, SRR5442757_2.fastq.gz. File(s) loaded: SRR5442758_1.fastq.gz, SRR5442758_2.fastq.gz. File(s) loaded: SRR5442759_1.fastq.gz, SRR5442759_2.fastq.gz. File(s) loaded: SRR5442760_1.fastq.gz, SRR5442760_2.fastq.gz. File(s) loaded: SRR5442761_1.fastq.gz, SRR5442761_2.fastq.gz. File(s) loaded: SRR5442762_1.fastq.gz, SRR5442762_2.fastq.gz. File(s) loaded: SRR5442763_1.fastq.gz, SRR5442763_2.fastq.gz. File(s) loaded: SRR5442764_1.fastq.gz, SRR5442764_2.fastq.gz. Time elapsed:5936083 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732270’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8445788706 Mar 30 17:40 SRX2732270.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1560506087 Mar 30 17:40 SRX2732270.sum.gz SRX2732270.sum.gz was set to analysis list. Analyzing SRX2732270.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4776 Mar 30 17:55 SRX2732270.mapsum.html Processing "SRX2732270.bisulalign.gz" (8445788706 bytes) *******************************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:01 SRX2732270.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 567392 Mar 30 18:09 SRX2732270.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732270.graph Output File (methyl) :SRX2732270.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732270.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732270.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225774784 Mar 30 18:22 SRX2732270.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 68314300 Mar 30 18:22 SRX2732270.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 238601479 Mar 30 18:22 SRX2732270.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 727014 Mar 30 18:51 SRX2732270.hmr -rw-r--r-- 1 okishinya so-ddmku 18905 Mar 30 18:51 SRX2732270.pmd -rw-r--r-- 1 okishinya so-ddmku 12108503 Mar 30 18:51 SRX2732270.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 129398707 Mar 30 18:55 SRX2732270.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 75768317 Mar 30 18:53 SRX2732270.cpg.methyl.bw =-=-=num_reads 73288816 =-=-=mapping_rate_1 0.869 =-=-=mapping_rate_2 0.816 =-=-=methyl_rate_cpg_total 0.744 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 30346 =-=-=partial_methyl_region 783 =-=-=high_methyl_region 504336 =-=-=coverage 1.86218 =-=-=end 210330_18:55:18 =-=-=duration 3.246