Job ID = 12237378 SRX = SRX2732269 Genome = rm6 Started at 210330_15:02:05 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7944670 spots for SRR5442749/SRR5442749.sra Written 7944670 spots for SRR5442749/SRR5442749.sra Read 7759280 spots for SRR5442750/SRR5442750.sra Written 7759280 spots for SRR5442750/SRR5442750.sra Read 8292524 spots for SRR5442751/SRR5442751.sra Written 8292524 spots for SRR5442751/SRR5442751.sra Read 8033927 spots for SRR5442752/SRR5442752.sra Written 8033927 spots for SRR5442752/SRR5442752.sra Read 9663210 spots for SRR5442753/SRR5442753.sra Written 9663210 spots for SRR5442753/SRR5442753.sra Read 9264186 spots for SRR5442754/SRR5442754.sra Written 9264186 spots for SRR5442754/SRR5442754.sra Read 9721731 spots for SRR5442755/SRR5442755.sra Written 9721731 spots for SRR5442755/SRR5442755.sra Read 9270177 spots for SRR5442756/SRR5442756.sra Written 9270177 spots for SRR5442756/SRR5442756.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 589211824 Mar 30 15:12 SRR5442756_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 646463863 Mar 30 15:12 SRR5442756_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 613935119 Mar 30 15:10 SRR5442755_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 679186564 Mar 30 15:10 SRR5442755_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 597631123 Mar 30 15:09 SRR5442754_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 652520440 Mar 30 15:09 SRR5442754_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 618262223 Mar 30 15:07 SRR5442753_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 678323147 Mar 30 15:07 SRR5442753_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 542695173 Mar 30 15:06 SRR5442752_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 586425196 Mar 30 15:06 SRR5442752_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 560088917 Mar 30 15:05 SRR5442751_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 606361749 Mar 30 15:05 SRR5442751_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 537723313 Mar 30 15:04 SRR5442750_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 573515981 Mar 30 15:04 SRR5442750_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 547358161 Mar 30 15:03 SRR5442749_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 587487663 Mar 30 15:03 SRR5442749_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732269.sum.gz output alignment file :SRX2732269.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 33566 ms) -FM-Index for g2a genome.... finished (elapsed: 66754 ms) -suffix array for c2t genome.... finished (elapsed: 75827 ms) -suffix array for g2a genome.... finished (elapsed: 84187 ms) -reference sequence.... finished (elapsed: 84535 ms) Index loading finished. File(s) loaded: SRR5442749_1.fastq.gz, SRR5442749_2.fastq.gz. File(s) loaded: SRR5442750_1.fastq.gz, SRR5442750_2.fastq.gz. File(s) loaded: SRR5442751_1.fastq.gz, SRR5442751_2.fastq.gz. File(s) loaded: SRR5442752_1.fastq.gz, SRR5442752_2.fastq.gz. File(s) loaded: SRR5442753_1.fastq.gz, SRR5442753_2.fastq.gz. File(s) loaded: SRR5442754_1.fastq.gz, SRR5442754_2.fastq.gz. File(s) loaded: SRR5442755_1.fastq.gz, SRR5442755_2.fastq.gz. File(s) loaded: SRR5442756_1.fastq.gz, SRR5442756_2.fastq.gz. Time elapsed:8675153 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732269’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8515700666 Mar 30 17:46 SRX2732269.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1500911463 Mar 30 17:46 SRX2732269.sum.gz SRX2732269.sum.gz was set to analysis list. Analyzing SRX2732269.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5051 Mar 30 17:59 SRX2732269.mapsum.html Processing "SRX2732269.bisulalign.gz" (8515700666 bytes) ******************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:06 SRX2732269.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559714 Mar 30 18:12 SRX2732269.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732269.graph Output File (methyl) :SRX2732269.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732269.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732269.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225928067 Mar 30 18:25 SRX2732269.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 87619556 Mar 30 18:25 SRX2732269.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 242664458 Mar 30 18:25 SRX2732269.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 831616 Mar 30 19:00 SRX2732269.hmr -rw-r--r-- 1 okishinya so-ddmku 28431 Mar 30 19:00 SRX2732269.pmd -rw-r--r-- 1 okishinya so-ddmku 11861668 Mar 30 19:00 SRX2732269.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 153407313 Mar 30 19:03 SRX2732269.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 94045298 Mar 30 19:02 SRX2732269.cpg.methyl.bw =-=-=num_reads 69949698 =-=-=mapping_rate_1 0.879 =-=-=mapping_rate_2 0.835 =-=-=methyl_rate_cpg_total 0.741 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 34715 =-=-=partial_methyl_region 1183 =-=-=high_methyl_region 493814 =-=-=coverage 1.90932 =-=-=end 210330_19:04:00 =-=-=duration 4.031