Job ID = 12237381 SRX = SRX2732268 Genome = rm6 Started at 210330_15:35:38 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 8065565 spots for SRR5442741/SRR5442741.sra Written 8065565 spots for SRR5442741/SRR5442741.sra Read 7838304 spots for SRR5442742/SRR5442742.sra Written 7838304 spots for SRR5442742/SRR5442742.sra Read 8432293 spots for SRR5442743/SRR5442743.sra Written 8432293 spots for SRR5442743/SRR5442743.sra Read 8152625 spots for SRR5442744/SRR5442744.sra Written 8152625 spots for SRR5442744/SRR5442744.sra Read 10276795 spots for SRR5442745/SRR5442745.sra Written 10276795 spots for SRR5442745/SRR5442745.sra Read 9831988 spots for SRR5442746/SRR5442746.sra Written 9831988 spots for SRR5442746/SRR5442746.sra Read 10365033 spots for SRR5442747/SRR5442747.sra Written 10365033 spots for SRR5442747/SRR5442747.sra Read 9867218 spots for SRR5442748/SRR5442748.sra Written 9867218 spots for SRR5442748/SRR5442748.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 616559458 Mar 30 15:45 SRR5442748_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 671427856 Mar 30 15:45 SRR5442748_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 644186478 Mar 30 15:44 SRR5442747_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 708403164 Mar 30 15:44 SRR5442747_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 624207171 Mar 30 15:42 SRR5442746_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 675989255 Mar 30 15:42 SRR5442746_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 647383555 Mar 30 15:41 SRR5442745_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 705612760 Mar 30 15:41 SRR5442745_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 542928646 Mar 30 15:40 SRR5442744_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 583639171 Mar 30 15:40 SRR5442744_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 561626286 Mar 30 15:38 SRR5442743_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 605934592 Mar 30 15:38 SRR5442743_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 535238435 Mar 30 15:37 SRR5442742_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 568270562 Mar 30 15:37 SRR5442742_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 547790474 Mar 30 15:36 SRR5442741_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 585565900 Mar 30 15:36 SRR5442741_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732268.sum.gz output alignment file :SRX2732268.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 51648 ms) -FM-Index for g2a genome.... finished (elapsed: 106175 ms) -suffix array for c2t genome.... finished (elapsed: 116198 ms) -suffix array for g2a genome.... finished (elapsed: 126216 ms) -reference sequence.... finished (elapsed: 126593 ms) Index loading finished. File(s) loaded: SRR5442741_1.fastq.gz, SRR5442741_2.fastq.gz. File(s) loaded: SRR5442742_1.fastq.gz, SRR5442742_2.fastq.gz. File(s) loaded: SRR5442743_1.fastq.gz, SRR5442743_2.fastq.gz. File(s) loaded: SRR5442744_1.fastq.gz, SRR5442744_2.fastq.gz. File(s) loaded: SRR5442745_1.fastq.gz, SRR5442745_2.fastq.gz. File(s) loaded: SRR5442746_1.fastq.gz, SRR5442746_2.fastq.gz. File(s) loaded: SRR5442747_1.fastq.gz, SRR5442747_2.fastq.gz. File(s) loaded: SRR5442748_1.fastq.gz, SRR5442748_2.fastq.gz. Time elapsed:6638092 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732268’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7970926256 Mar 30 17:47 SRX2732268.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1542984509 Mar 30 17:47 SRX2732268.sum.gz SRX2732268.sum.gz was set to analysis list. Analyzing SRX2732268.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4933 Mar 30 18:00 SRX2732268.mapsum.html Processing "SRX2732268.bisulalign.gz" (7970926256 bytes) ************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:07 SRX2732268.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 567394 Mar 30 18:14 SRX2732268.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732268.graph Output File (methyl) :SRX2732268.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732268.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732268.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225526434 Mar 30 18:27 SRX2732268.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 67223625 Mar 30 18:27 SRX2732268.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 238463899 Mar 30 18:27 SRX2732268.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 703046 Mar 30 18:56 SRX2732268.hmr -rw-r--r-- 1 okishinya so-ddmku 21018 Mar 30 18:56 SRX2732268.pmd -rw-r--r-- 1 okishinya so-ddmku 12483510 Mar 30 18:56 SRX2732268.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 127932949 Mar 30 18:59 SRX2732268.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 75290104 Mar 30 18:57 SRX2732268.cpg.methyl.bw =-=-=num_reads 72829821 =-=-=mapping_rate_1 0.86 =-=-=mapping_rate_2 0.824 =-=-=methyl_rate_cpg_total 0.749 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 29354 =-=-=partial_methyl_region 870 =-=-=high_methyl_region 520081 =-=-=coverage 1.76489 =-=-=end 210330_18:59:47 =-=-=duration 3.402