Job ID = 12237366 SRX = SRX2732267 Genome = rm6 Started at 210330_14:58:58 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7944662 spots for SRR5442733/SRR5442733.sra Written 7944662 spots for SRR5442733/SRR5442733.sra Read 7701121 spots for SRR5442734/SRR5442734.sra Written 7701121 spots for SRR5442734/SRR5442734.sra Read 8283689 spots for SRR5442735/SRR5442735.sra Written 8283689 spots for SRR5442735/SRR5442735.sra Read 7973514 spots for SRR5442736/SRR5442736.sra Written 7973514 spots for SRR5442736/SRR5442736.sra Read 9147742 spots for SRR5442737/SRR5442737.sra Written 9147742 spots for SRR5442737/SRR5442737.sra Read 8707519 spots for SRR5442738/SRR5442738.sra Written 8707519 spots for SRR5442738/SRR5442738.sra Read 9225895 spots for SRR5442739/SRR5442739.sra Written 9225895 spots for SRR5442739/SRR5442739.sra Read 8734295 spots for SRR5442740/SRR5442740.sra Written 8734295 spots for SRR5442740/SRR5442740.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 556835267 Mar 30 15:07 SRR5442740_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 607179194 Mar 30 15:07 SRR5442740_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 584664695 Mar 30 15:06 SRR5442739_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 643842756 Mar 30 15:06 SRR5442739_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 563194841 Mar 30 15:05 SRR5442738_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 611220397 Mar 30 15:05 SRR5442738_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 586917220 Mar 30 15:04 SRR5442737_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 641057670 Mar 30 15:04 SRR5442737_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 541031600 Mar 30 15:02 SRR5442736_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 581684945 Mar 30 15:02 SRR5442736_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 562019075 Mar 30 15:01 SRR5442735_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 606273218 Mar 30 15:01 SRR5442735_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 535611295 Mar 30 15:00 SRR5442734_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 568738880 Mar 30 15:00 SRR5442734_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 549690498 Mar 30 15:00 SRR5442733_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 587659449 Mar 30 15:00 SRR5442733_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732267.sum.gz output alignment file :SRX2732267.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 28419 ms) -FM-Index for g2a genome.... finished (elapsed: 57783 ms) -suffix array for c2t genome.... finished (elapsed: 66250 ms) -suffix array for g2a genome.... finished (elapsed: 74639 ms) -reference sequence.... finished (elapsed: 74951 ms) Index loading finished. File(s) loaded: SRR5442733_1.fastq.gz, SRR5442733_2.fastq.gz. File(s) loaded: SRR5442734_1.fastq.gz, SRR5442734_2.fastq.gz. File(s) loaded: SRR5442735_1.fastq.gz, SRR5442735_2.fastq.gz. File(s) loaded: SRR5442736_1.fastq.gz, SRR5442736_2.fastq.gz. File(s) loaded: SRR5442737_1.fastq.gz, SRR5442737_2.fastq.gz. File(s) loaded: SRR5442738_1.fastq.gz, SRR5442738_2.fastq.gz. File(s) loaded: SRR5442739_1.fastq.gz, SRR5442739_2.fastq.gz. File(s) loaded: SRR5442740_1.fastq.gz, SRR5442740_2.fastq.gz. Time elapsed:8584023 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732267’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8119861045 Mar 30 17:38 SRX2732267.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1448668695 Mar 30 17:38 SRX2732267.sum.gz SRX2732267.sum.gz was set to analysis list. Analyzing SRX2732267.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5300 Mar 30 17:49 SRX2732267.mapsum.html Processing "SRX2732267.bisulalign.gz" (8119861045 bytes) **********************************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:54 SRX2732267.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559658 Mar 30 18:00 SRX2732267.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732267.graph Output File (methyl) :SRX2732267.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732267.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732267.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225768692 Mar 30 18:11 SRX2732267.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 90050329 Mar 30 18:11 SRX2732267.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 243236808 Mar 30 18:11 SRX2732267.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 853678 Mar 30 18:47 SRX2732267.hmr -rw-r--r-- 1 okishinya so-ddmku 28472 Mar 30 18:47 SRX2732267.pmd -rw-r--r-- 1 okishinya so-ddmku 11839044 Mar 30 18:47 SRX2732267.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 156566835 Mar 30 18:50 SRX2732267.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 126605393 Mar 30 18:48 SRX2732267.cpg.methyl.bw =-=-=num_reads 67718432 =-=-=mapping_rate_1 0.872 =-=-=mapping_rate_2 0.832 =-=-=methyl_rate_cpg_total 0.745 =-=-=methyl_rate_cpg_lambda 0.973 =-=-=low_methyl_region 35632 =-=-=partial_methyl_region 1182 =-=-=high_methyl_region 492760 =-=-=coverage 1.79285 =-=-=end 210330_18:50:45 =-=-=duration 3.863