Job ID = 12237365 SRX = SRX2732266 Genome = rm6 Started at 210330_14:58:58 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7853787 spots for SRR5442725/SRR5442725.sra Written 7853787 spots for SRR5442725/SRR5442725.sra Read 7653228 spots for SRR5442726/SRR5442726.sra Written 7653228 spots for SRR5442726/SRR5442726.sra Read 8082618 spots for SRR5442727/SRR5442727.sra Written 8082618 spots for SRR5442727/SRR5442727.sra Read 7809497 spots for SRR5442728/SRR5442728.sra Written 7809497 spots for SRR5442728/SRR5442728.sra Read 9089223 spots for SRR5442729/SRR5442729.sra Written 9089223 spots for SRR5442729/SRR5442729.sra Read 8722153 spots for SRR5442730/SRR5442730.sra Written 8722153 spots for SRR5442730/SRR5442730.sra Read 9241185 spots for SRR5442731/SRR5442731.sra Written 9241185 spots for SRR5442731/SRR5442731.sra Read 8979302 spots for SRR5442732/SRR5442732.sra Written 8979302 spots for SRR5442732/SRR5442732.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 493118318 Mar 30 15:07 SRR5442732_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 575154130 Mar 30 15:07 SRR5442732_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 508062993 Mar 30 15:05 SRR5442731_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 597007447 Mar 30 15:05 SRR5442731_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 486302122 Mar 30 15:04 SRR5442730_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 572888946 Mar 30 15:04 SRR5442730_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 503921655 Mar 30 15:03 SRR5442729_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 598032820 Mar 30 15:03 SRR5442729_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 414271386 Mar 30 15:02 SRR5442728_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 450464120 Mar 30 15:02 SRR5442728_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 432279806 Mar 30 15:01 SRR5442727_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 467958010 Mar 30 15:01 SRR5442727_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 412649543 Mar 30 15:00 SRR5442726_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 446792717 Mar 30 15:00 SRR5442726_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 423200167 Mar 30 14:59 SRR5442725_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 456288114 Mar 30 14:59 SRR5442725_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732266.sum.gz output alignment file :SRX2732266.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 28734 ms) -FM-Index for g2a genome.... finished (elapsed: 57432 ms) -suffix array for c2t genome.... finished (elapsed: 65203 ms) -suffix array for g2a genome.... finished (elapsed: 72497 ms) -reference sequence.... finished (elapsed: 72729 ms) Index loading finished. File(s) loaded: SRR5442725_1.fastq.gz, SRR5442725_2.fastq.gz. File(s) loaded: SRR5442726_1.fastq.gz, SRR5442726_2.fastq.gz. File(s) loaded: SRR5442727_1.fastq.gz, SRR5442727_2.fastq.gz. File(s) loaded: SRR5442728_1.fastq.gz, SRR5442728_2.fastq.gz. File(s) loaded: SRR5442729_1.fastq.gz, SRR5442729_2.fastq.gz. File(s) loaded: SRR5442730_1.fastq.gz, SRR5442730_2.fastq.gz. File(s) loaded: SRR5442731_1.fastq.gz, SRR5442731_2.fastq.gz. File(s) loaded: SRR5442732_1.fastq.gz, SRR5442732_2.fastq.gz. Time elapsed:7543185 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732266’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8164453801 Mar 30 17:20 SRX2732266.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1461514461 Mar 30 17:20 SRX2732266.sum.gz SRX2732266.sum.gz was set to analysis list. Analyzing SRX2732266.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5093 Mar 30 17:31 SRX2732266.mapsum.html Processing "SRX2732266.bisulalign.gz" (8164453801 bytes) *********************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:36 SRX2732266.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559680 Mar 30 17:42 SRX2732266.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732266.graph Output File (methyl) :SRX2732266.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732266.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732266.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225912326 Mar 30 17:54 SRX2732266.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 103900786 Mar 30 17:54 SRX2732266.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 246871819 Mar 30 17:54 SRX2732266.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 959864 Mar 30 18:34 SRX2732266.hmr -rw-r--r-- 1 okishinya so-ddmku 34272 Mar 30 18:34 SRX2732266.pmd -rw-r--r-- 1 okishinya so-ddmku 10529236 Mar 30 18:34 SRX2732266.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 171498831 Mar 30 18:38 SRX2732266.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 143839791 Mar 30 18:36 SRX2732266.cpg.methyl.bw =-=-=num_reads 67430992 =-=-=mapping_rate_1 0.903 =-=-=mapping_rate_2 0.866 =-=-=methyl_rate_cpg_total 0.739 =-=-=methyl_rate_cpg_lambda 0.973 =-=-=low_methyl_region 40067 =-=-=partial_methyl_region 1432 =-=-=high_methyl_region 437919 =-=-=coverage 1.88589 =-=-=end 210330_18:38:18 =-=-=duration 3.655