Job ID = 12237395 SRX = SRX2732265 Genome = rm6 Started at 210330_15:47:39 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 12151369 spots for SRR5442717/SRR5442717.sra Written 12151369 spots for SRR5442717/SRR5442717.sra Read 11815501 spots for SRR5442718/SRR5442718.sra Written 11815501 spots for SRR5442718/SRR5442718.sra Read 12664567 spots for SRR5442719/SRR5442719.sra Written 12664567 spots for SRR5442719/SRR5442719.sra Read 12244195 spots for SRR5442720/SRR5442720.sra Written 12244195 spots for SRR5442720/SRR5442720.sra Read 8697356 spots for SRR5442721/SRR5442721.sra Written 8697356 spots for SRR5442721/SRR5442721.sra Read 8300069 spots for SRR5442722/SRR5442722.sra Written 8300069 spots for SRR5442722/SRR5442722.sra Read 8782232 spots for SRR5442723/SRR5442723.sra Written 8782232 spots for SRR5442723/SRR5442723.sra Read 8349401 spots for SRR5442724/SRR5442724.sra Written 8349401 spots for SRR5442724/SRR5442724.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 524139795 Mar 30 15:58 SRR5442724_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 570712238 Mar 30 15:58 SRR5442724_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 548227724 Mar 30 15:57 SRR5442723_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 602835156 Mar 30 15:57 SRR5442723_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 529037574 Mar 30 15:56 SRR5442722_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 573174320 Mar 30 15:56 SRR5442722_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 550267556 Mar 30 15:55 SRR5442721_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 599586987 Mar 30 15:55 SRR5442721_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 817997416 Mar 30 15:54 SRR5442720_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 880058760 Mar 30 15:54 SRR5442720_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 846081848 Mar 30 15:52 SRR5442719_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 913693425 Mar 30 15:52 SRR5442719_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 809722320 Mar 30 15:50 SRR5442718_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 859772476 Mar 30 15:50 SRR5442718_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 828327975 Mar 30 15:49 SRR5442717_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 885908188 Mar 30 15:49 SRR5442717_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732265.sum.gz output alignment file :SRX2732265.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 53770 ms) -FM-Index for g2a genome.... finished (elapsed: 109904 ms) -suffix array for c2t genome.... finished (elapsed: 122260 ms) -suffix array for g2a genome.... finished (elapsed: 133906 ms) -reference sequence.... finished (elapsed: 134284 ms) Index loading finished. File(s) loaded: SRR5442717_1.fastq.gz, SRR5442717_2.fastq.gz. File(s) loaded: SRR5442718_1.fastq.gz, SRR5442718_2.fastq.gz. File(s) loaded: SRR5442719_1.fastq.gz, SRR5442719_2.fastq.gz. File(s) loaded: SRR5442720_1.fastq.gz, SRR5442720_2.fastq.gz. File(s) loaded: SRR5442721_1.fastq.gz, SRR5442721_2.fastq.gz. File(s) loaded: SRR5442722_1.fastq.gz, SRR5442722_2.fastq.gz. File(s) loaded: SRR5442723_1.fastq.gz, SRR5442723_2.fastq.gz. File(s) loaded: SRR5442724_1.fastq.gz, SRR5442724_2.fastq.gz. Time elapsed:8821025 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732265’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8964592588 Mar 30 18:38 SRX2732265.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1765877280 Mar 30 18:38 SRX2732265.sum.gz SRX2732265.sum.gz was set to analysis list. Analyzing SRX2732265.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5214 Mar 30 18:54 SRX2732265.mapsum.html Processing "SRX2732265.bisulalign.gz" (8964592588 bytes) ******************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 19:01 SRX2732265.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559747 Mar 30 19:09 SRX2732265.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732265.graph Output File (methyl) :SRX2732265.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732265.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732265.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 111140466 Mar 30 19:23 SRX2732265.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 226318813 Mar 30 19:23 SRX2732265.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 248347122 Mar 30 19:23 SRX2732265.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 966281 Mar 30 20:06 SRX2732265.hmr -rw-r--r-- 1 okishinya so-ddmku 33719 Mar 30 20:06 SRX2732265.pmd -rw-r--r-- 1 okishinya so-ddmku 8996931 Mar 30 20:06 SRX2732265.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 182258738 Mar 30 20:11 SRX2732265.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 153646059 Mar 30 20:08 SRX2732265.cpg.methyl.bw =-=-=num_reads 83004689 =-=-=mapping_rate_1 0.863 =-=-=mapping_rate_2 0.825 =-=-=methyl_rate_cpg_total 0.754 =-=-=methyl_rate_cpg_lambda 0.973 =-=-=low_methyl_region 40333 =-=-=partial_methyl_region 1403 =-=-=high_methyl_region 373814 =-=-=coverage 1.86309 =-=-=end 210330_20:11:54 =-=-=duration 4.404