Job ID = 12237360 SRX = SRX2732264 Genome = rm6 Started at 210330_14:57:28 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 5672580 spots for SRR5442705/SRR5442705.sra Written 5672580 spots for SRR5442705/SRR5442705.sra Read 5028164 spots for SRR5442706/SRR5442706.sra Written 5028164 spots for SRR5442706/SRR5442706.sra Read 5297630 spots for SRR5442707/SRR5442707.sra Written 5297630 spots for SRR5442707/SRR5442707.sra Read 5056254 spots for SRR5442708/SRR5442708.sra Written 5056254 spots for SRR5442708/SRR5442708.sra Read 5423580 spots for SRR5442709/SRR5442709.sra Written 5423580 spots for SRR5442709/SRR5442709.sra Read 5750944 spots for SRR5442710/SRR5442710.sra Written 5750944 spots for SRR5442710/SRR5442710.sra Read 5616969 spots for SRR5442711/SRR5442711.sra Written 5616969 spots for SRR5442711/SRR5442711.sra Read 5782783 spots for SRR5442712/SRR5442712.sra Written 5782783 spots for SRR5442712/SRR5442712.sra Read 5459544 spots for SRR5442713/SRR5442713.sra Written 5459544 spots for SRR5442713/SRR5442713.sra Read 5875157 spots for SRR5442714/SRR5442714.sra Written 5875157 spots for SRR5442714/SRR5442714.sra Read 5562460 spots for SRR5442715/SRR5442715.sra Written 5562460 spots for SRR5442715/SRR5442715.sra Read 5335518 spots for SRR5442716/SRR5442716.sra Written 5335518 spots for SRR5442716/SRR5442716.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 340297806 Mar 30 15:06 SRR5442716_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 369638211 Mar 30 15:06 SRR5442716_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 328766865 Mar 30 15:05 SRR5442715_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 362311789 Mar 30 15:05 SRR5442715_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 343572710 Mar 30 15:05 SRR5442714_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 382326200 Mar 30 15:05 SRR5442714_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 329756764 Mar 30 15:04 SRR5442713_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 360244065 Mar 30 15:04 SRR5442713_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 342911677 Mar 30 15:03 SRR5442712_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 381042186 Mar 30 15:03 SRR5442712_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 371998146 Mar 30 15:02 SRR5442711_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 400171224 Mar 30 15:02 SRR5442711_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 383218557 Mar 30 15:01 SRR5442710_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 412178197 Mar 30 15:01 SRR5442710_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 369126807 Mar 30 15:01 SRR5442709_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 392171905 Mar 30 15:01 SRR5442709_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 323250189 Mar 30 15:00 SRR5442708_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 347893067 Mar 30 15:00 SRR5442708_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 335026599 Mar 30 14:59 SRR5442707_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 364232694 Mar 30 14:59 SRR5442707_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 325666454 Mar 30 14:59 SRR5442706_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 349446593 Mar 30 14:59 SRR5442706_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 381812804 Mar 30 14:58 SRR5442705_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 409579639 Mar 30 14:58 SRR5442705_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732264.sum.gz output alignment file :SRX2732264.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 53546 ms) -FM-Index for g2a genome.... finished (elapsed: 109472 ms) -suffix array for c2t genome.... finished (elapsed: 122217 ms) -suffix array for g2a genome.... finished (elapsed: 133977 ms) -reference sequence.... finished (elapsed: 134357 ms) Index loading finished. File(s) loaded: SRR5442705_1.fastq.gz, SRR5442705_2.fastq.gz. File(s) loaded: SRR5442706_1.fastq.gz, SRR5442706_2.fastq.gz. File(s) loaded: SRR5442707_1.fastq.gz, SRR5442707_2.fastq.gz. File(s) loaded: SRR5442708_1.fastq.gz, SRR5442708_2.fastq.gz. File(s) loaded: SRR5442709_1.fastq.gz, SRR5442709_2.fastq.gz. File(s) loaded: SRR5442710_1.fastq.gz, SRR5442710_2.fastq.gz. File(s) loaded: SRR5442711_1.fastq.gz, SRR5442711_2.fastq.gz. File(s) loaded: SRR5442712_1.fastq.gz, SRR5442712_2.fastq.gz. File(s) loaded: SRR5442713_1.fastq.gz, SRR5442713_2.fastq.gz. File(s) loaded: SRR5442714_1.fastq.gz, SRR5442714_2.fastq.gz. File(s) loaded: SRR5442715_1.fastq.gz, SRR5442715_2.fastq.gz. File(s) loaded: SRR5442716_1.fastq.gz, SRR5442716_2.fastq.gz. Time elapsed:6571552 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732264’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8069594134 Mar 30 17:05 SRX2732264.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1416381178 Mar 30 17:05 SRX2732264.sum.gz SRX2732264.sum.gz was set to analysis list. Analyzing SRX2732264.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5292 Mar 30 17:19 SRX2732264.mapsum.html Processing "SRX2732264.bisulalign.gz" (8069594134 bytes) ************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:25 SRX2732264.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559651 Mar 30 17:31 SRX2732264.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732264.graph Output File (methyl) :SRX2732264.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732264.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732264.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225645367 Mar 30 17:45 SRX2732264.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 82612771 Mar 30 17:45 SRX2732264.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 241414857 Mar 30 17:45 SRX2732264.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 802993 Mar 30 18:25 SRX2732264.hmr -rw-r--r-- 1 okishinya so-ddmku 27421 Mar 30 18:25 SRX2732264.pmd -rw-r--r-- 1 okishinya so-ddmku 11996790 Mar 30 18:25 SRX2732264.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 147364608 Mar 30 18:29 SRX2732264.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 89646249 Mar 30 18:27 SRX2732264.cpg.methyl.bw =-=-=num_reads 65861581 =-=-=mapping_rate_1 0.882 =-=-=mapping_rate_2 0.852 =-=-=methyl_rate_cpg_total 0.743 =-=-=methyl_rate_cpg_lambda 0.975 =-=-=low_methyl_region 33525 =-=-=partial_methyl_region 1138 =-=-=high_methyl_region 499572 =-=-=coverage 1.80442 =-=-=end 210330_18:29:47 =-=-=duration 3.538