Job ID = 12237389 SRX = SRX2732263 Genome = rm6 Started at 210330_15:43:45 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 6721027 spots for SRR5442693/SRR5442693.sra Written 6721027 spots for SRR5442693/SRR5442693.sra Read 5884286 spots for SRR5442694/SRR5442694.sra Written 5884286 spots for SRR5442694/SRR5442694.sra Read 6192108 spots for SRR5442695/SRR5442695.sra Written 6192108 spots for SRR5442695/SRR5442695.sra Read 5912944 spots for SRR5442696/SRR5442696.sra Written 5912944 spots for SRR5442696/SRR5442696.sra Read 6447640 spots for SRR5442697/SRR5442697.sra Written 6447640 spots for SRR5442697/SRR5442697.sra Read 6805911 spots for SRR5442698/SRR5442698.sra Written 6805911 spots for SRR5442698/SRR5442698.sra Read 6662355 spots for SRR5442699/SRR5442699.sra Written 6662355 spots for SRR5442699/SRR5442699.sra Read 6715457 spots for SRR5442700/SRR5442700.sra Written 6715457 spots for SRR5442700/SRR5442700.sra Read 6334790 spots for SRR5442701/SRR5442701.sra Written 6334790 spots for SRR5442701/SRR5442701.sra Read 6812419 spots for SRR5442702/SRR5442702.sra Written 6812419 spots for SRR5442702/SRR5442702.sra Read 6450049 spots for SRR5442703/SRR5442703.sra Written 6450049 spots for SRR5442703/SRR5442703.sra Read 6231387 spots for SRR5442704/SRR5442704.sra Written 6231387 spots for SRR5442704/SRR5442704.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 394584155 Mar 30 15:54 SRR5442704_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 427862960 Mar 30 15:54 SRR5442704_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 378316346 Mar 30 15:53 SRR5442703_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 417672800 Mar 30 15:53 SRR5442703_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 395294700 Mar 30 15:52 SRR5442702_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 440473213 Mar 30 15:52 SRR5442702_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 379512386 Mar 30 15:51 SRR5442701_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 415286502 Mar 30 15:51 SRR5442701_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 394904454 Mar 30 15:50 SRR5442700_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 439375028 Mar 30 15:50 SRR5442700_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 437752679 Mar 30 15:49 SRR5442699_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 470756745 Mar 30 15:49 SRR5442699_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 449741398 Mar 30 15:49 SRR5442698_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 483202137 Mar 30 15:49 SRR5442698_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 435408836 Mar 30 15:48 SRR5442697_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 462480676 Mar 30 15:48 SRR5442697_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 375481781 Mar 30 15:47 SRR5442696_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 403895088 Mar 30 15:47 SRR5442696_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 388895519 Mar 30 15:46 SRR5442695_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 422294630 Mar 30 15:46 SRR5442695_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 378489502 Mar 30 15:45 SRR5442694_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 405672112 Mar 30 15:45 SRR5442694_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 448338122 Mar 30 15:44 SRR5442693_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 480587209 Mar 30 15:44 SRR5442693_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732263.sum.gz output alignment file :SRX2732263.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 54243 ms) -FM-Index for g2a genome.... finished (elapsed: 111546 ms) -suffix array for c2t genome.... finished (elapsed: 141914 ms) -suffix array for g2a genome.... finished (elapsed: 173184 ms) -reference sequence.... finished (elapsed: 176311 ms) Index loading finished. File(s) loaded: SRR5442693_1.fastq.gz, SRR5442693_2.fastq.gz. File(s) loaded: SRR5442694_1.fastq.gz, SRR5442694_2.fastq.gz. File(s) loaded: SRR5442695_1.fastq.gz, SRR5442695_2.fastq.gz. File(s) loaded: SRR5442696_1.fastq.gz, SRR5442696_2.fastq.gz. File(s) loaded: SRR5442697_1.fastq.gz, SRR5442697_2.fastq.gz. File(s) loaded: SRR5442698_1.fastq.gz, SRR5442698_2.fastq.gz. File(s) loaded: SRR5442699_1.fastq.gz, SRR5442699_2.fastq.gz. File(s) loaded: SRR5442700_1.fastq.gz, SRR5442700_2.fastq.gz. File(s) loaded: SRR5442701_1.fastq.gz, SRR5442701_2.fastq.gz. File(s) loaded: SRR5442702_1.fastq.gz, SRR5442702_2.fastq.gz. File(s) loaded: SRR5442703_1.fastq.gz, SRR5442703_2.fastq.gz. File(s) loaded: SRR5442704_1.fastq.gz, SRR5442704_2.fastq.gz. Time elapsed:6808225 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732263’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 9327343434 Mar 30 17:59 SRX2732263.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1656453087 Mar 30 17:59 SRX2732263.sum.gz SRX2732263.sum.gz was set to analysis list. Analyzing SRX2732263.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 6147 Mar 30 18:15 SRX2732263.mapsum.html Processing "SRX2732263.bisulalign.gz" (9327343434 bytes) **************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:21 SRX2732263.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 569383 Mar 30 18:28 SRX2732263.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732263.graph Output File (methyl) :SRX2732263.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732263.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732263.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 226325656 Mar 30 18:41 SRX2732263.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 73954212 Mar 30 18:41 SRX2732263.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 239972160 Mar 30 18:41 SRX2732263.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 750893 Mar 30 19:12 SRX2732263.hmr -rw-r--r-- 1 okishinya so-ddmku 19652 Mar 30 19:12 SRX2732263.pmd -rw-r--r-- 1 okishinya so-ddmku 11881916 Mar 30 19:12 SRX2732263.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 136615159 Mar 30 19:16 SRX2732263.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 80934104 Mar 30 19:14 SRX2732263.cpg.methyl.bw =-=-=num_reads 77170356 =-=-=mapping_rate_1 0.88 =-=-=mapping_rate_2 0.849 =-=-=methyl_rate_cpg_total 0.743 =-=-=methyl_rate_cpg_lambda 0.976 =-=-=low_methyl_region 31345 =-=-=partial_methyl_region 816 =-=-=high_methyl_region 494992 =-=-=coverage 2.11413 =-=-=end 210330_19:16:24 =-=-=duration 3.544