Job ID = 12237372 SRX = SRX2732262 Genome = rm6 Started at 210330_15:00:50 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 8066921 spots for SRR5442685/SRR5442685.sra Written 8066921 spots for SRR5442685/SRR5442685.sra Read 7878766 spots for SRR5442686/SRR5442686.sra Written 7878766 spots for SRR5442686/SRR5442686.sra Read 8310974 spots for SRR5442687/SRR5442687.sra Written 8310974 spots for SRR5442687/SRR5442687.sra Read 8034470 spots for SRR5442688/SRR5442688.sra Written 8034470 spots for SRR5442688/SRR5442688.sra Read 9150766 spots for SRR5442689/SRR5442689.sra Written 9150766 spots for SRR5442689/SRR5442689.sra Read 8786830 spots for SRR5442690/SRR5442690.sra Written 8786830 spots for SRR5442690/SRR5442690.sra Read 9299072 spots for SRR5442691/SRR5442691.sra Written 9299072 spots for SRR5442691/SRR5442691.sra Read 9046581 spots for SRR5442692/SRR5442692.sra Written 9046581 spots for SRR5442692/SRR5442692.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 499617940 Mar 30 15:09 SRR5442692_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 582751453 Mar 30 15:09 SRR5442692_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 513996684 Mar 30 15:08 SRR5442691_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 603004494 Mar 30 15:08 SRR5442691_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 492775777 Mar 30 15:06 SRR5442690_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 580291630 Mar 30 15:06 SRR5442690_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 510296290 Mar 30 15:05 SRR5442689_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 604342394 Mar 30 15:05 SRR5442689_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 428299230 Mar 30 15:04 SRR5442688_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 466586213 Mar 30 15:04 SRR5442688_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 446663560 Mar 30 15:03 SRR5442687_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 483447288 Mar 30 15:03 SRR5442687_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 426871098 Mar 30 15:02 SRR5442686_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 463196436 Mar 30 15:02 SRR5442686_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 436875395 Mar 30 15:01 SRR5442685_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 470895877 Mar 30 15:01 SRR5442685_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732262.sum.gz output alignment file :SRX2732262.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 32141 ms) -FM-Index for g2a genome.... finished (elapsed: 64034 ms) -suffix array for c2t genome.... finished (elapsed: 72458 ms) -suffix array for g2a genome.... finished (elapsed: 80724 ms) -reference sequence.... finished (elapsed: 81007 ms) Index loading finished. File(s) loaded: SRR5442685_1.fastq.gz, SRR5442685_2.fastq.gz. File(s) loaded: SRR5442686_1.fastq.gz, SRR5442686_2.fastq.gz. File(s) loaded: SRR5442687_1.fastq.gz, SRR5442687_2.fastq.gz. File(s) loaded: SRR5442688_1.fastq.gz, SRR5442688_2.fastq.gz. File(s) loaded: SRR5442689_1.fastq.gz, SRR5442689_2.fastq.gz. File(s) loaded: SRR5442690_1.fastq.gz, SRR5442690_2.fastq.gz. File(s) loaded: SRR5442691_1.fastq.gz, SRR5442691_2.fastq.gz. File(s) loaded: SRR5442692_1.fastq.gz, SRR5442692_2.fastq.gz. Time elapsed:8111628 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732262’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8388931821 Mar 30 17:32 SRX2732262.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1483948237 Mar 30 17:32 SRX2732262.sum.gz SRX2732262.sum.gz was set to analysis list. Analyzing SRX2732262.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 6148 Mar 30 17:43 SRX2732262.mapsum.html Processing "SRX2732262.bisulalign.gz" (8388931821 bytes) ************************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:50 SRX2732262.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559648 Mar 30 17:56 SRX2732262.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732262.graph Output File (methyl) :SRX2732262.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732262.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732262.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 226019945 Mar 30 18:07 SRX2732262.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 102555009 Mar 30 18:07 SRX2732262.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 246729159 Mar 30 18:07 SRX2732262.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 923387 Mar 30 18:45 SRX2732262.hmr -rw-r--r-- 1 okishinya so-ddmku 32818 Mar 30 18:45 SRX2732262.pmd -rw-r--r-- 1 okishinya so-ddmku 10744413 Mar 30 18:45 SRX2732262.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 169960042 Mar 30 18:49 SRX2732262.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 142226623 Mar 30 18:47 SRX2732262.cpg.methyl.bw =-=-=num_reads 68574375 =-=-=mapping_rate_1 0.902 =-=-=mapping_rate_2 0.862 =-=-=methyl_rate_cpg_total 0.739 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 38542 =-=-=partial_methyl_region 1368 =-=-=high_methyl_region 446890 =-=-=coverage 1.93662 =-=-=end 210330_18:49:34 =-=-=duration 3.812