Job ID = 12237385 SRX = SRX2732261 Genome = rm6 Started at 210330_15:41:31 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 5924293 spots for SRR5442673/SRR5442673.sra Written 5924293 spots for SRR5442673/SRR5442673.sra Read 5908945 spots for SRR5442674/SRR5442674.sra Written 5908945 spots for SRR5442674/SRR5442674.sra Read 6238150 spots for SRR5442675/SRR5442675.sra Written 6238150 spots for SRR5442675/SRR5442675.sra Read 5949701 spots for SRR5442676/SRR5442676.sra Written 5949701 spots for SRR5442676/SRR5442676.sra Read 5656178 spots for SRR5442677/SRR5442677.sra Written 5656178 spots for SRR5442677/SRR5442677.sra Read 6017893 spots for SRR5442678/SRR5442678.sra Written 6017893 spots for SRR5442678/SRR5442678.sra Read 5870509 spots for SRR5442679/SRR5442679.sra Written 5870509 spots for SRR5442679/SRR5442679.sra Read 7063181 spots for SRR5442680/SRR5442680.sra Written 7063181 spots for SRR5442680/SRR5442680.sra Read 6688966 spots for SRR5442681/SRR5442681.sra Written 6688966 spots for SRR5442681/SRR5442681.sra Read 7181299 spots for SRR5442682/SRR5442682.sra Written 7181299 spots for SRR5442682/SRR5442682.sra Read 6823718 spots for SRR5442683/SRR5442683.sra Written 6823718 spots for SRR5442683/SRR5442683.sra Read 6257233 spots for SRR5442684/SRR5442684.sra Written 6257233 spots for SRR5442684/SRR5442684.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 392984319 Mar 30 15:51 SRR5442684_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 425419935 Mar 30 15:51 SRR5442684_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 396682227 Mar 30 15:50 SRR5442683_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 437193125 Mar 30 15:50 SRR5442683_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 413414286 Mar 30 15:49 SRR5442682_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 459273336 Mar 30 15:49 SRR5442682_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 397032697 Mar 30 15:48 SRR5442681_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 433894637 Mar 30 15:48 SRR5442681_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 411959055 Mar 30 15:48 SRR5442680_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 457002440 Mar 30 15:48 SRR5442680_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 382688573 Mar 30 15:47 SRR5442679_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 410892646 Mar 30 15:47 SRR5442679_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 394808017 Mar 30 15:46 SRR5442678_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 423476278 Mar 30 15:46 SRR5442678_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 378912967 Mar 30 15:45 SRR5442677_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 401956460 Mar 30 15:45 SRR5442677_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 374582422 Mar 30 15:44 SRR5442676_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 402729904 Mar 30 15:44 SRR5442676_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 388730325 Mar 30 15:44 SRR5442675_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 421449383 Mar 30 15:44 SRR5442675_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 376688449 Mar 30 15:43 SRR5442674_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 403691555 Mar 30 15:43 SRR5442674_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 392541960 Mar 30 15:42 SRR5442673_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 420116706 Mar 30 15:42 SRR5442673_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732261.sum.gz output alignment file :SRX2732261.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 52467 ms) -FM-Index for g2a genome.... finished (elapsed: 107029 ms) -suffix array for c2t genome.... finished (elapsed: 117347 ms) -suffix array for g2a genome.... finished (elapsed: 128639 ms) -reference sequence.... finished (elapsed: 129186 ms) Index loading finished. File(s) loaded: SRR5442673_1.fastq.gz, SRR5442673_2.fastq.gz. File(s) loaded: SRR5442674_1.fastq.gz, SRR5442674_2.fastq.gz. File(s) loaded: SRR5442675_1.fastq.gz, SRR5442675_2.fastq.gz. File(s) loaded: SRR5442676_1.fastq.gz, SRR5442676_2.fastq.gz. File(s) loaded: SRR5442677_1.fastq.gz, SRR5442677_2.fastq.gz. File(s) loaded: SRR5442678_1.fastq.gz, SRR5442678_2.fastq.gz. File(s) loaded: SRR5442679_1.fastq.gz, SRR5442679_2.fastq.gz. File(s) loaded: SRR5442680_1.fastq.gz, SRR5442680_2.fastq.gz. File(s) loaded: SRR5442681_1.fastq.gz, SRR5442681_2.fastq.gz. File(s) loaded: SRR5442682_1.fastq.gz, SRR5442682_2.fastq.gz. File(s) loaded: SRR5442683_1.fastq.gz, SRR5442683_2.fastq.gz. File(s) loaded: SRR5442684_1.fastq.gz, SRR5442684_2.fastq.gz. Time elapsed:6159874 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732261’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8474650752 Mar 30 17:45 SRX2732261.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1618051169 Mar 30 17:45 SRX2732261.sum.gz SRX2732261.sum.gz was set to analysis list. Analyzing SRX2732261.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5671 Mar 30 17:59 SRX2732261.mapsum.html Processing "SRX2732261.bisulalign.gz" (8474650752 bytes) **********************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:06 SRX2732261.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559668 Mar 30 18:13 SRX2732261.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732261.graph Output File (methyl) :SRX2732261.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732261.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732261.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225981246 Mar 30 18:27 SRX2732261.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 88603737 Mar 30 18:27 SRX2732261.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 243102724 Mar 30 18:27 SRX2732261.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 848516 Mar 30 19:10 SRX2732261.hmr -rw-r--r-- 1 okishinya so-ddmku 28595 Mar 30 19:10 SRX2732261.pmd -rw-r--r-- 1 okishinya so-ddmku 11793046 Mar 30 19:10 SRX2732261.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 155219911 Mar 30 19:14 SRX2732261.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 95653993 Mar 30 19:12 SRX2732261.cpg.methyl.bw =-=-=num_reads 75580065 =-=-=mapping_rate_1 0.875 =-=-=mapping_rate_2 0.845 =-=-=methyl_rate_cpg_total 0.742 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 35416 =-=-=partial_methyl_region 1189 =-=-=high_methyl_region 490947 =-=-=coverage 1.87807 =-=-=end 210330_19:14:29 =-=-=duration 3.549