Job ID = 12237384 SRX = SRX2732260 Genome = rm6 Started at 210330_15:41:31 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 6513945 spots for SRR5442661/SRR5442661.sra Written 6513945 spots for SRR5442661/SRR5442661.sra Read 5743933 spots for SRR5442662/SRR5442662.sra Written 5743933 spots for SRR5442662/SRR5442662.sra Read 6069833 spots for SRR5442663/SRR5442663.sra Written 6069833 spots for SRR5442663/SRR5442663.sra Read 5793514 spots for SRR5442664/SRR5442664.sra Written 5793514 spots for SRR5442664/SRR5442664.sra Read 6226258 spots for SRR5442665/SRR5442665.sra Written 6226258 spots for SRR5442665/SRR5442665.sra Read 6618311 spots for SRR5442666/SRR5442666.sra Written 6618311 spots for SRR5442666/SRR5442666.sra Read 6455099 spots for SRR5442667/SRR5442667.sra Written 6455099 spots for SRR5442667/SRR5442667.sra Read 6465189 spots for SRR5442668/SRR5442668.sra Written 6465189 spots for SRR5442668/SRR5442668.sra Read 6120609 spots for SRR5442669/SRR5442669.sra Written 6120609 spots for SRR5442669/SRR5442669.sra Read 6568450 spots for SRR5442670/SRR5442670.sra Written 6568450 spots for SRR5442670/SRR5442670.sra Read 6237976 spots for SRR5442671/SRR5442671.sra Written 6237976 spots for SRR5442671/SRR5442671.sra Read 6084027 spots for SRR5442672/SRR5442672.sra Written 6084027 spots for SRR5442672/SRR5442672.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 377698595 Mar 30 15:51 SRR5442672_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 408664631 Mar 30 15:51 SRR5442672_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 357513085 Mar 30 15:50 SRR5442671_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 394122706 Mar 30 15:50 SRR5442671_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 372747902 Mar 30 15:49 SRR5442670_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 414378686 Mar 30 15:49 SRR5442670_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 358474869 Mar 30 15:48 SRR5442669_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 391665612 Mar 30 15:48 SRR5442669_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 371839132 Mar 30 15:48 SRR5442668_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 412626170 Mar 30 15:48 SRR5442668_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 416013973 Mar 30 15:47 SRR5442667_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 448300312 Mar 30 15:47 SRR5442667_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 429069131 Mar 30 15:46 SRR5442666_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 462072492 Mar 30 15:46 SRR5442666_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 412428966 Mar 30 15:45 SRR5442665_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 438830190 Mar 30 15:45 SRR5442665_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 360518012 Mar 30 15:44 SRR5442664_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 387085412 Mar 30 15:44 SRR5442664_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 373614628 Mar 30 15:44 SRR5442663_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 404983461 Mar 30 15:44 SRR5442663_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 362165446 Mar 30 15:43 SRR5442662_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 387565664 Mar 30 15:43 SRR5442662_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 426505294 Mar 30 15:42 SRR5442661_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 458387504 Mar 30 15:42 SRR5442661_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732260.sum.gz output alignment file :SRX2732260.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 51780 ms) -FM-Index for g2a genome.... finished (elapsed: 106392 ms) -suffix array for c2t genome.... finished (elapsed: 117788 ms) -suffix array for g2a genome.... finished (elapsed: 129778 ms) -reference sequence.... finished (elapsed: 130148 ms) Index loading finished. File(s) loaded: SRR5442661_1.fastq.gz, SRR5442661_2.fastq.gz. File(s) loaded: SRR5442662_1.fastq.gz, SRR5442662_2.fastq.gz. File(s) loaded: SRR5442663_1.fastq.gz, SRR5442663_2.fastq.gz. File(s) loaded: SRR5442664_1.fastq.gz, SRR5442664_2.fastq.gz. File(s) loaded: SRR5442665_1.fastq.gz, SRR5442665_2.fastq.gz. File(s) loaded: SRR5442666_1.fastq.gz, SRR5442666_2.fastq.gz. File(s) loaded: SRR5442667_1.fastq.gz, SRR5442667_2.fastq.gz. File(s) loaded: SRR5442668_1.fastq.gz, SRR5442668_2.fastq.gz. File(s) loaded: SRR5442669_1.fastq.gz, SRR5442669_2.fastq.gz. File(s) loaded: SRR5442670_1.fastq.gz, SRR5442670_2.fastq.gz. File(s) loaded: SRR5442671_1.fastq.gz, SRR5442671_2.fastq.gz. File(s) loaded: SRR5442672_1.fastq.gz, SRR5442672_2.fastq.gz. Time elapsed:7093495 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732260’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 8313379960 Mar 30 18:00 SRX2732260.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1589988365 Mar 30 18:00 SRX2732260.sum.gz SRX2732260.sum.gz was set to analysis list. Analyzing SRX2732260.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 4949 Mar 30 18:14 SRX2732260.mapsum.html Processing "SRX2732260.bisulalign.gz" (8313379960 bytes) ******************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 18:21 SRX2732260.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559692 Mar 30 18:28 SRX2732260.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732260.graph Output File (methyl) :SRX2732260.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732260.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732260.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 226005086 Mar 30 18:42 SRX2732260.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 87733490 Mar 30 18:42 SRX2732260.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 243328981 Mar 30 18:42 SRX2732260.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 815999 Mar 30 19:25 SRX2732260.hmr -rw-r--r-- 1 okishinya so-ddmku 27850 Mar 30 19:25 SRX2732260.pmd -rw-r--r-- 1 okishinya so-ddmku 11860332 Mar 30 19:25 SRX2732260.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 153955400 Mar 30 19:29 SRX2732260.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 95735499 Mar 30 19:27 SRX2732260.cpg.methyl.bw =-=-=num_reads 74897144 =-=-=mapping_rate_1 0.865 =-=-=mapping_rate_2 0.835 =-=-=methyl_rate_cpg_total 0.754 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 34063 =-=-=partial_methyl_region 1158 =-=-=high_methyl_region 493757 =-=-=coverage 1.8478 =-=-=end 210330_19:29:48 =-=-=duration 3.804