Job ID = 12237394 SRX = SRX2732259 Genome = rm6 Started at 210330_15:46:54 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7123333 spots for SRR5442649/SRR5442649.sra Written 7123333 spots for SRR5442649/SRR5442649.sra Read 6262659 spots for SRR5442650/SRR5442650.sra Written 6262659 spots for SRR5442650/SRR5442650.sra Read 6611003 spots for SRR5442651/SRR5442651.sra Written 6611003 spots for SRR5442651/SRR5442651.sra Read 6301236 spots for SRR5442652/SRR5442652.sra Written 6301236 spots for SRR5442652/SRR5442652.sra Read 6803936 spots for SRR5442653/SRR5442653.sra Written 6803936 spots for SRR5442653/SRR5442653.sra Read 7238587 spots for SRR5442654/SRR5442654.sra Written 7238587 spots for SRR5442654/SRR5442654.sra Read 7067541 spots for SRR5442655/SRR5442655.sra Written 7067541 spots for SRR5442655/SRR5442655.sra Read 7203639 spots for SRR5442656/SRR5442656.sra Written 7203639 spots for SRR5442656/SRR5442656.sra Read 6787157 spots for SRR5442657/SRR5442657.sra Written 6787157 spots for SRR5442657/SRR5442657.sra Read 7311223 spots for SRR5442658/SRR5442658.sra Written 7311223 spots for SRR5442658/SRR5442658.sra Read 6928942 spots for SRR5442659/SRR5442659.sra Written 6928942 spots for SRR5442659/SRR5442659.sra Read 6634898 spots for SRR5442660/SRR5442660.sra Written 6634898 spots for SRR5442660/SRR5442660.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 418364110 Mar 30 15:58 SRR5442660_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 450739088 Mar 30 15:58 SRR5442660_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 403964264 Mar 30 15:57 SRR5442659_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 443202373 Mar 30 15:57 SRR5442659_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 420814455 Mar 30 15:56 SRR5442658_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 466598104 Mar 30 15:56 SRR5442658_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 403536565 Mar 30 15:55 SRR5442657_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 439349937 Mar 30 15:55 SRR5442657_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 420618272 Mar 30 15:54 SRR5442656_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 465424417 Mar 30 15:54 SRR5442656_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 460303048 Mar 30 15:53 SRR5442655_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 493975444 Mar 30 15:53 SRR5442655_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 474375195 Mar 30 15:52 SRR5442654_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 508767329 Mar 30 15:52 SRR5442654_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 455134659 Mar 30 15:51 SRR5442653_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 482880758 Mar 30 15:51 SRR5442653_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 400473817 Mar 30 15:50 SRR5442652_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 426029052 Mar 30 15:50 SRR5442652_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 413310192 Mar 30 15:49 SRR5442651_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 446041236 Mar 30 15:49 SRR5442651_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 400333877 Mar 30 15:48 SRR5442650_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 426905874 Mar 30 15:48 SRR5442650_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 471211766 Mar 30 15:47 SRR5442649_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 504253924 Mar 30 15:47 SRR5442649_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732259.sum.gz output alignment file :SRX2732259.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 54136 ms) -FM-Index for g2a genome.... finished (elapsed: 111223 ms) -suffix array for c2t genome.... finished (elapsed: 123983 ms) -suffix array for g2a genome.... finished (elapsed: 136806 ms) -reference sequence.... finished (elapsed: 137171 ms) Index loading finished. File(s) loaded: SRR5442649_1.fastq.gz, SRR5442649_2.fastq.gz. File(s) loaded: SRR5442650_1.fastq.gz, SRR5442650_2.fastq.gz. File(s) loaded: SRR5442651_1.fastq.gz, SRR5442651_2.fastq.gz. File(s) loaded: SRR5442652_1.fastq.gz, SRR5442652_2.fastq.gz. File(s) loaded: SRR5442653_1.fastq.gz, SRR5442653_2.fastq.gz. File(s) loaded: SRR5442654_1.fastq.gz, SRR5442654_2.fastq.gz. File(s) loaded: SRR5442655_1.fastq.gz, SRR5442655_2.fastq.gz. File(s) loaded: SRR5442656_1.fastq.gz, SRR5442656_2.fastq.gz. File(s) loaded: SRR5442657_1.fastq.gz, SRR5442657_2.fastq.gz. File(s) loaded: SRR5442658_1.fastq.gz, SRR5442658_2.fastq.gz. File(s) loaded: SRR5442659_1.fastq.gz, SRR5442659_2.fastq.gz. File(s) loaded: SRR5442660_1.fastq.gz, SRR5442660_2.fastq.gz. Time elapsed:9699648 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732259’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 9317676136 Mar 30 18:53 SRX2732259.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1759432011 Mar 30 18:53 SRX2732259.sum.gz SRX2732259.sum.gz was set to analysis list. Analyzing SRX2732259.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5123 Mar 30 19:09 SRX2732259.mapsum.html Processing "SRX2732259.bisulalign.gz" (9317676136 bytes) ************************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 19:16 SRX2732259.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559689 Mar 30 19:23 SRX2732259.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732259.graph Output File (methyl) :SRX2732259.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732259.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732259.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 226465838 Mar 30 19:37 SRX2732259.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 94491907 Mar 30 19:37 SRX2732259.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 244746350 Mar 30 19:37 SRX2732259.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 860895 Mar 30 20:23 SRX2732259.hmr -rw-r--r-- 1 okishinya so-ddmku 30310 Mar 30 20:23 SRX2732259.pmd -rw-r--r-- 1 okishinya so-ddmku 11522201 Mar 30 20:23 SRX2732259.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 162432118 Mar 30 20:28 SRX2732259.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 132730881 Mar 30 20:25 SRX2732259.cpg.methyl.bw =-=-=num_reads 82274153 =-=-=mapping_rate_1 0.872 =-=-=mapping_rate_2 0.843 =-=-=methyl_rate_cpg_total 0.743 =-=-=methyl_rate_cpg_lambda 0.974 =-=-=low_methyl_region 35942 =-=-=partial_methyl_region 1258 =-=-=high_methyl_region 479428 =-=-=coverage 2.01465 =-=-=end 210330_20:28:17 =-=-=duration 4.689