Job ID = 12237354 SRX = SRX2732258 Genome = rm6 Started at 210330_14:56:35 sra ファイルのダウンロード中... Read layout: PAIRED fastq に変換中... Read 7620243 spots for SRR5442641/SRR5442641.sra Written 7620243 spots for SRR5442641/SRR5442641.sra Read 7429604 spots for SRR5442642/SRR5442642.sra Written 7429604 spots for SRR5442642/SRR5442642.sra Read 7839031 spots for SRR5442643/SRR5442643.sra Written 7839031 spots for SRR5442643/SRR5442643.sra Read 7585823 spots for SRR5442644/SRR5442644.sra Written 7585823 spots for SRR5442644/SRR5442644.sra Read 8218060 spots for SRR5442645/SRR5442645.sra Written 8218060 spots for SRR5442645/SRR5442645.sra Read 7880611 spots for SRR5442646/SRR5442646.sra Written 7880611 spots for SRR5442646/SRR5442646.sra Read 8355453 spots for SRR5442647/SRR5442647.sra Written 8355453 spots for SRR5442647/SRR5442647.sra Read 8121350 spots for SRR5442648/SRR5442648.sra Written 8121350 spots for SRR5442648/SRR5442648.sra fastq に変換しました。 -rw-r--r-- 1 okishinya so-ddmku 445511676 Mar 30 15:03 SRR5442648_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 517915256 Mar 30 15:03 SRR5442648_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 458863200 Mar 30 15:02 SRR5442647_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 537314386 Mar 30 15:02 SRR5442647_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 438840628 Mar 30 15:01 SRR5442646_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 515441590 Mar 30 15:01 SRR5442646_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 455109508 Mar 30 15:00 SRR5442645_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 538347303 Mar 30 15:00 SRR5442645_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 401724183 Mar 30 14:59 SRR5442644_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 435941697 Mar 30 14:59 SRR5442644_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 418565878 Mar 30 14:59 SRR5442643_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 452093527 Mar 30 14:59 SRR5442643_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 399942897 Mar 30 14:58 SRR5442642_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 432238015 Mar 30 14:58 SRR5442642_2.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 409925342 Mar 30 14:57 SRR5442641_1.fastq.gz -rw-r--r-- 1 okishinya so-ddmku 441245474 Mar 30 14:57 SRR5442641_2.fastq.gz Start BMap mapping with following parameters species :R_norvegicus revision :rm6 seed offset :0 seed iterate :20 seed step :5 min seed hit :2 minimum seed length :20 maximum seed length :26 seed max hit count :10 minimum alignment score:150 output summary file :SRX2732258.sum.gz output alignment file :SRX2732258.bisulalign Loading index (FM-index) compression factor for suffix array is 2. compression factor for counter table is 32. -FM-index for c2t genome.... finished (elapsed: 29077 ms) -FM-Index for g2a genome.... finished (elapsed: 57899 ms) -suffix array for c2t genome.... finished (elapsed: 66523 ms) -suffix array for g2a genome.... finished (elapsed: 74691 ms) -reference sequence.... finished (elapsed: 74986 ms) Index loading finished. File(s) loaded: SRR5442641_1.fastq.gz, SRR5442641_2.fastq.gz. File(s) loaded: SRR5442642_1.fastq.gz, SRR5442642_2.fastq.gz. File(s) loaded: SRR5442643_1.fastq.gz, SRR5442643_2.fastq.gz. File(s) loaded: SRR5442644_1.fastq.gz, SRR5442644_2.fastq.gz. File(s) loaded: SRR5442645_1.fastq.gz, SRR5442645_2.fastq.gz. File(s) loaded: SRR5442646_1.fastq.gz, SRR5442646_2.fastq.gz. File(s) loaded: SRR5442647_1.fastq.gz, SRR5442647_2.fastq.gz. File(s) loaded: SRR5442648_1.fastq.gz, SRR5442648_2.fastq.gz. Time elapsed:7243453 ms mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2732258’: File exists =-=-=BMap OK -rw-r--r-- 1 okishinya so-ddmku 7367281611 Mar 30 17:11 SRX2732258.bisulalign.gz -rw-r--r-- 1 okishinya so-ddmku 1361543670 Mar 30 17:11 SRX2732258.sum.gz SRX2732258.sum.gz was set to analysis list. Analyzing SRX2732258.sum.gz. =-=-=MapSum OK -rw-r--r-- 1 okishinya so-ddmku 5038 Mar 30 17:20 SRX2732258.mapsum.html Processing "SRX2732258.bisulalign.gz" (7367281611 bytes) **********************: finished. Start exporting ... Finished. =-=-=MPTC OK -rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 30 17:25 SRX2732258.graph =-=-=CalcCoverage OK -rw-r--r-- 1 okishinya so-ddmku 559611 Mar 30 17:32 SRX2732258.stat.html BinSeq :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq GraphFile :SRX2732258.graph Output File (methyl) :SRX2732258.cpg.methyl.bedGraph.gz Output File (cover) :SRX2732258.cpg.cover.bedGraph.gz Output File (tab) :/dev/null Output File (methpipe) :SRX2732258.cpg.methpipe.tab.gz =-=-=MethExport OK -rw-r--r-- 1 okishinya so-ddmku 225534947 Mar 30 17:44 SRX2732258.cpg.cover.bedGraph.gz -rw-r--r-- 1 okishinya so-ddmku 99044400 Mar 30 17:44 SRX2732258.cpg.methpipe.tab.gz -rw-r--r-- 1 okishinya so-ddmku 246174304 Mar 30 17:44 SRX2732258.cpg.methyl.bedGraph.gz =-=-=bmap_sum OK =-=-=hypo- hyper-me-region OK -rw-r--r-- 1 okishinya so-ddmku 877665 Mar 30 18:21 SRX2732258.hmr -rw-r--r-- 1 okishinya so-ddmku 29668 Mar 30 18:21 SRX2732258.pmd -rw-r--r-- 1 okishinya so-ddmku 10710377 Mar 30 18:21 SRX2732258.hypermr =-=-=BigWig OK -rw-r--r-- 1 okishinya so-ddmku 164834657 Mar 30 18:24 SRX2732258.cpg.cover.bw -rw-r--r-- 1 okishinya so-ddmku 138233107 Mar 30 18:22 SRX2732258.cpg.methyl.bw =-=-=num_reads 63050168 =-=-=mapping_rate_1 0.899 =-=-=mapping_rate_2 0.86 =-=-=methyl_rate_cpg_total 0.73 =-=-=methyl_rate_cpg_lambda 0.973 =-=-=low_methyl_region 36627 =-=-=partial_methyl_region 1236 =-=-=high_methyl_region 445739 =-=-=coverage 1.74626 =-=-=end 210330_18:25:04 =-=-=duration 3.474