Job ID = 12237424
SRX = SRX2352925
Genome = rm6
Started at	210330_17:00:32

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 251753522 spots for SRR5026784/SRR5026784.sra
Written 251753522 spots for SRR5026784/SRR5026784.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 19328576389 Mar 30 17:33 SRR5026784_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 23791291081 Mar 30 17:33 SRR5026784_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2352925.sum.gz
 output alignment file  :SRX2352925.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 31221 ms)
 -FM-Index for g2a genome.... finished (elapsed: 63191 ms)
 -suffix array for c2t genome.... finished (elapsed: 93284 ms)
 -suffix array for g2a genome.... finished (elapsed: 123357 ms)
 -reference sequence.... finished (elapsed: 126298 ms)
Index loading finished.
File(s) loaded: SRR5026784_1.fastq.gz, SRR5026784_2.fastq.gz.
Time elapsed:37895666 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2352925’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 46448134682 Mar 31 04:42 SRX2352925.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  5573207368 Mar 31 04:42 SRX2352925.sum.gz
SRX2352925.sum.gz was set to analysis list.
Analyzing SRX2352925.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5515 Mar 31 05:40 SRX2352925.mapsum.html
Processing "SRX2352925.bisulalign.gz" (46448134682 bytes)
*************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 05:56 SRX2352925.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      574285 Mar 31 06:04 SRX2352925.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2352925.graph
Output File (methyl)    :SRX2352925.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2352925.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2352925.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   243371514 Mar 31 06:17 SRX2352925.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   224498250 Mar 31 06:17 SRX2352925.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   293023376 Mar 31 06:17 SRX2352925.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2163103 Mar 31 07:12 SRX2352925.hmr
-rw-r--r-- 1 okishinya so-ddmku     103445 Mar 31 07:12 SRX2352925.pmd
-rw-r--r-- 1 okishinya so-ddmku    7096151 Mar 31 07:12 SRX2352925.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  293622437 Mar 31 07:19 SRX2352925.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  296581177 Mar 31 07:15 SRX2352925.cpg.methyl.bw

=-=-=num_reads	251753521
=-=-=mapping_rate_1	0.915
=-=-=mapping_rate_2	0.905
=-=-=methyl_rate_cpg_total	0.756
=-=-=methyl_rate_cpg_lambda	0.014
=-=-=low_methyl_region	90213
=-=-=partial_methyl_region	4319
=-=-=high_methyl_region	293631
=-=-=coverage	8.26879
=-=-=end	210331_07:19:53
=-=-=duration	14.322