Job ID = 12237421
SRX = SRX2352924
Genome = rm6
Started at	210330_16:55:40

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 230247235 spots for SRR5026783/SRR5026783.sra
Written 230247235 spots for SRR5026783/SRR5026783.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 17784980183 Mar 30 17:25 SRR5026783_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 21881538468 Mar 30 17:25 SRR5026783_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2352924.sum.gz
 output alignment file  :SRX2352924.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 28470 ms)
 -FM-Index for g2a genome.... finished (elapsed: 56851 ms)
 -suffix array for c2t genome.... finished (elapsed: 65227 ms)
 -suffix array for g2a genome.... finished (elapsed: 73542 ms)
 -reference sequence.... finished (elapsed: 73860 ms)
Index loading finished.
File(s) loaded: SRR5026783_1.fastq.gz, SRR5026783_2.fastq.gz.
Time elapsed:31867524 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2352924’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 42483939400 Mar 31 02:51 SRX2352924.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  5088924552 Mar 31 02:51 SRX2352924.sum.gz
SRX2352924.sum.gz was set to analysis list.
Analyzing SRX2352924.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5745 Mar 31 03:44 SRX2352924.mapsum.html
Processing "SRX2352924.bisulalign.gz" (42483939400 bytes)
************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 04:03 SRX2352924.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      572268 Mar 31 04:11 SRX2352924.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2352924.graph
Output File (methyl)    :SRX2352924.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2352924.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2352924.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   240498035 Mar 31 04:23 SRX2352924.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   219265067 Mar 31 04:23 SRX2352924.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   288884914 Mar 31 04:23 SRX2352924.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2100847 Mar 31 05:18 SRX2352924.hmr
-rw-r--r-- 1 okishinya so-ddmku     102772 Mar 31 05:18 SRX2352924.pmd
-rw-r--r-- 1 okishinya so-ddmku    7276830 Mar 31 05:18 SRX2352924.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  290574159 Mar 31 05:25 SRX2352924.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  291579230 Mar 31 05:21 SRX2352924.cpg.methyl.bw

=-=-=num_reads	230247234
=-=-=mapping_rate_1	0.913
=-=-=mapping_rate_2	0.903
=-=-=methyl_rate_cpg_total	0.771
=-=-=methyl_rate_cpg_lambda	0.017
=-=-=low_methyl_region	87629
=-=-=partial_methyl_region	4288
=-=-=high_methyl_region	301104
=-=-=coverage	7.39136
=-=-=end	210331_05:25:30
=-=-=duration	12.497