Job ID = 12237425
SRX = SRX2352923
Genome = rm6
Started at	210330_17:03:23

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 262968943 spots for SRR5026782/SRR5026782.sra
Written 262968943 spots for SRR5026782/SRR5026782.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 20247324838 Mar 30 17:41 SRR5026782_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 25034451543 Mar 30 17:41 SRR5026782_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2352923.sum.gz
 output alignment file  :SRX2352923.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 55414 ms)
 -FM-Index for g2a genome.... finished (elapsed: 113186 ms)
 -suffix array for c2t genome.... finished (elapsed: 144538 ms)
 -suffix array for g2a genome.... finished (elapsed: 174547 ms)
 -reference sequence.... finished (elapsed: 177272 ms)
Index loading finished.
File(s) loaded: SRR5026782_1.fastq.gz, SRR5026782_2.fastq.gz.
Time elapsed:40708214 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2352923’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 48596675775 Mar 31 05:51 SRX2352923.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  5831520140 Mar 31 05:51 SRX2352923.sum.gz
SRX2352923.sum.gz was set to analysis list.
Analyzing SRX2352923.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5584 Mar 31 07:11 SRX2352923.mapsum.html
Processing "SRX2352923.bisulalign.gz" (48596675775 bytes)
*******: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 07:32 SRX2352923.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      574403 Mar 31 07:42 SRX2352923.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2352923.graph
Output File (methyl)    :SRX2352923.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2352923.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2352923.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   244994076 Mar 31 07:57 SRX2352923.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   227254701 Mar 31 07:57 SRX2352923.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   295349250 Mar 31 07:57 SRX2352923.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2259564 Mar 31 09:04 SRX2352923.hmr
-rw-r--r-- 1 okishinya so-ddmku     104394 Mar 31 09:04 SRX2352923.pmd
-rw-r--r-- 1 okishinya so-ddmku    7108425 Mar 31 09:04 SRX2352923.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  295103918 Mar 31 09:12 SRX2352923.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  299405613 Mar 31 09:08 SRX2352923.cpg.methyl.bw

=-=-=num_reads	262968941
=-=-=mapping_rate_1	0.92
=-=-=mapping_rate_2	0.912
=-=-=methyl_rate_cpg_total	0.752
=-=-=methyl_rate_cpg_lambda	0.015
=-=-=low_methyl_region	94257
=-=-=partial_methyl_region	4358
=-=-=high_methyl_region	294238
=-=-=coverage	8.8966
=-=-=end	210331_09:13:01
=-=-=duration	16.160