Job ID = 12237427
SRX = SRX2352922
Genome = rm6
Started at	210330_17:05:38

sra ファイルのダウンロード中...

Read layout: PAIRED


fastq に変換中...

Read 277602027 spots for SRR5026781/SRR5026781.sra
Written 277602027 spots for SRR5026781/SRR5026781.sra

fastq に変換しました。

-rw-r--r-- 1 okishinya so-ddmku 21185367699 Mar 30 17:39 SRR5026781_1.fastq.gz
-rw-r--r-- 1 okishinya so-ddmku 26348125442 Mar 30 17:39 SRR5026781_2.fastq.gz
Start BMap mapping with following parameters
 species                :R_norvegicus
 revision               :rm6
 seed offset            :0
 seed iterate           :20
 seed step              :5
 min seed hit           :2
 minimum seed length    :20
 maximum seed length    :26
 seed max hit count     :10
 minimum alignment score:150
 output summary file    :SRX2352922.sum.gz
 output alignment file  :SRX2352922.bisulalign

Loading index (FM-index)
    compression factor for suffix array is 2.
    compression factor for counter table is 32.
 -FM-index for c2t genome.... finished (elapsed: 32434 ms)
 -FM-Index for g2a genome.... finished (elapsed: 63065 ms)
 -suffix array for c2t genome.... finished (elapsed: 92796 ms)
 -suffix array for g2a genome.... finished (elapsed: 120738 ms)
 -reference sequence.... finished (elapsed: 123599 ms)
Index loading finished.
File(s) loaded: SRR5026781_1.fastq.gz, SRR5026781_2.fastq.gz.
Time elapsed:37853845 ms
mkdir: cannot create directory ‘/home/okishinya/tmpDirForFastq/SRX2352922’: File exists
=-=-=BMap	OK
-rw-r--r-- 1 okishinya so-ddmku 51139027440 Mar 31 04:50 SRX2352922.bisulalign.gz
-rw-r--r-- 1 okishinya so-ddmku  6145881848 Mar 31 04:50 SRX2352922.sum.gz
SRX2352922.sum.gz was set to analysis list.
Analyzing SRX2352922.sum.gz.
=-=-=MapSum	OK
-rw-r--r-- 1 okishinya so-ddmku        5351 Mar 31 05:54 SRX2352922.mapsum.html
Processing "SRX2352922.bisulalign.gz" (51139027440 bytes)
**********************************: finished.
Start exporting ...
Finished.
=-=-=MPTC	OK
-rw-r--r-- 1 okishinya so-ddmku 22961918759 Mar 31 06:13 SRX2352922.graph
=-=-=CalcCoverage	OK
-rw-r--r-- 1 okishinya so-ddmku      576325 Mar 31 06:21 SRX2352922.stat.html
BinSeq                  :/lustre7/home/lustre4/okishinya/chipatlas/bin/Revisions/R_norvegicus/rm6/R_norvegicus_rm6.binseq
GraphFile               :SRX2352922.graph
Output File (methyl)    :SRX2352922.cpg.methyl.bedGraph.gz
Output File (cover)    :SRX2352922.cpg.cover.bedGraph.gz
Output File (tab)    :/dev/null
Output File (methpipe)    :SRX2352922.cpg.methpipe.tab.gz

=-=-=MethExport	OK
-rw-r--r-- 1 okishinya so-ddmku   246112380 Mar 31 06:33 SRX2352922.cpg.cover.bedGraph.gz
-rw-r--r-- 1 okishinya so-ddmku   228822299 Mar 31 06:33 SRX2352922.cpg.methpipe.tab.gz
-rw-r--r-- 1 okishinya so-ddmku   296365600 Mar 31 06:33 SRX2352922.cpg.methyl.bedGraph.gz
=-=-=bmap_sum	OK
=-=-=hypo- hyper-me-region	OK
-rw-r--r-- 1 okishinya so-ddmku    2271811 Mar 31 07:28 SRX2352922.hmr
-rw-r--r-- 1 okishinya so-ddmku     105428 Mar 31 07:28 SRX2352922.pmd
-rw-r--r-- 1 okishinya so-ddmku    7076004 Mar 31 07:28 SRX2352922.hypermr
=-=-=BigWig	OK
-rw-r--r-- 1 okishinya so-ddmku  296268107 Mar 31 07:34 SRX2352922.cpg.cover.bw
-rw-r--r-- 1 okishinya so-ddmku  300869753 Mar 31 07:31 SRX2352922.cpg.methyl.bw

=-=-=num_reads	277602026
=-=-=mapping_rate_1	0.918
=-=-=mapping_rate_2	0.908
=-=-=methyl_rate_cpg_total	0.753
=-=-=methyl_rate_cpg_lambda	0.022
=-=-=low_methyl_region	94720
=-=-=partial_methyl_region	4402
=-=-=high_methyl_region	292779
=-=-=coverage	9.28034
=-=-=end	210331_07:35:21
=-=-=duration	14.495